ArticleGenome biology and evolution2018
Expansion and Functional Divergence of the SHORT VEGETATIVE PHASE (SVP) Genes in Eudicots.
Article in Genome biology and evolution, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.
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25 citing papers in PubMed, 50 citations in OpenAlex.
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- Genomic insights into Castanopsis carlesii and Castanea henryi: flower and fruit development and evolution of NLR genes in the beech-oak family.Molecular horticulture · 2025Article
- Isolation and Functional Characterization of the MADS-Box GeneInternational journal of molecular sciences · 2025Article
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- An Overview on MADS Box Members in Plants: A Meta-Review.International journal of molecular sciences · 2024Review
- Diversification of FT-like genes in the PEBP family contributes to the variation of flowering traits in Sapindaceae species.Molecular horticulture · 2024Article
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- Structural and Functional Analysis of the MADS-Box Genes Reveals Their Functions in Cold Stress Responses and Flower Development in Tea Plant (Plants (Basel, Switzerland) · 2023Article
- Overexpression ofActa biochimica et biophysica Sinica · 2023Article
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- Evolutionary origin and functional specialization of Dormancy-Associated MADS box (DAM) proteins in perennial crops.BMC plant biology · 2022Article
- Characterization of Phytohormones and Transcriptomic Profiling of the Female and Male Inflorescence Development in Manchurian Walnut (International journal of molecular sciences · 2022Article
- Identification and Characterization of the MIKC-Type MADS-Box Gene Family inInternational journal of molecular sciences · 2022Article
- MIKC-type MADS-box transcription factor gene family in peanut: Genome-wide characterization and expression analysis under abiotic stress.Frontiers in plant science · 2022Article
- The collaborative mode byFrontiers in plant science · 2022Article
- Unraveling the role of MADS transcription factor complexes in apple tree dormancy.The New phytologist · 2021Article
- The genome of Cymbidium sinense revealed the evolution of orchid traits.Plant biotechnology journal · 2021Article
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Authors and funding
5 authors at 2 institutions in 4 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
SHORT VEGETATIVE PHASE (SVP) genes are members of the well-known MADS-box gene family that regulates vital developmental processes in plants. In Arabidopsis, there are two SVP paralogs, SVP/AGAMOUS-LIKE22 (SVP/AGL22) and AGL24. SVP protein suppresses the flowering process, whereas AGL24 acts as a flowering activator. Phylogenetic analysis of SVP genes representing most of the sequenced eudicot species showed that the SVP gene family could be divided into three major clades in eudicots (SVP1, SVP2, and SVP3), most likely resulting from an ancient whole-genome triplication in core eudicots. Among them, the SVP1 (SVP) and SVP2 (AGL24) clades are retained in nearly all species, whereas the SVP3 clade has been lost in Brassicaceae, Myrtaceae, and some species in other families. Reflecting lineage-specific tandem duplication and whole-genome duplication, SVP gene copy numbers ranged from 3 to 11 in the analyzed species. Sequence analysis showed that SVP3 proteins have obvious differences with SVP1 and SVP2 in the C-terminal (C) domain and intervening (I) domain. Positive selection analysis also showed that the ω (dN/dS) value was highest in the SVP3 clade, with 17 positive selection sites detected in the SVP3 clade. Promoter analysis for cis-regulatory elements showed that some genes in the SVP2 and SVP3 clades may be regulated by abscisic acid, ethylene, and gibberellin. RNA-seq data from grape, poplar, and apple revealed that genes in SVP3 group are highly expressed in vegetative organs such as buds, leaves, cotyledons, and dormant buds in particular, indicating the involvement of genes belong to SVP3 group in the dormancy process. Overall, the findings underscore the functional diversity of the SVP genes in eudicots.
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