Evidence map›Paper›PMID 30363716›Full record

ArticleComputational and mathematical methods in medicine2018

Dissipative Coupling of Fluid and Immersed Objects for Modelling of Cells in Flow.

Martin Bušík, Martin Slavík, Ivan Cimrák

Abstract read
In one paragraph

Article in Computational and mathematical methods in medicine, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Martin BušíkUniversity of Žilina, Univerzitná 8215/1, Žilina 01026, Slovakia.
Martin SlavíkUniversity of Žilina, Univerzitná 8215/1, Žilina 01026, Slovakia.
Ivan CimrákUniversity of Žilina, Univerzitná 8215/1, Žilina 01026, Slovakia.ORCID 0000-0002-0389-7891

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Modelling of cell flow for biomedical applications relies in many cases on the correct description of fluid-structure interaction between the cell membrane and the surrounding fluid. We analyse the coupling of the lattice-Boltzmann method for the fluid and the spring network model for the cells. We investigate the bare friction parameter of fluid-structure interaction that is mediated via dissipative coupling. Such coupling mimics the no-slip boundary condition at the interface between the fluid and object. It is an alternative method to the immersed boundary method. Here, the fluid-structure coupling is provided by forces penalising local differences between velocities of the object's boundaries and the surrounding fluid. The method includes a phenomenological friction coefficient that determines the strength of the coupling. This work aims at determination of proper values of such friction coefficient. We derive an explicit formula for computation of this coefficient depending on the mesh density assuming a reference friction is known. We validate this formula on spherical and ellipsoidal objects. We also provide sensitivity analysis of the formula on all parameters entering the model. We conclude that such formula may be used also for objects with irregular shapes provided that the triangular mesh covering the object's surface is in some sense uniform. Our findings are justified by two computational experiments where we simulate motion of a red blood cell in a capillary and in a shear flow. Both experiments confirm our results presented in this work.

Indexed as

ElasticityShear StrengthAlgorithmsCalibrationComputer SimulationErythrocyte MembraneErythrocytesFrictionHumansMedical InformaticsModels, BiologicalModels, StatisticalMotionViscosity

Identifiers

PMID30363716
PMCPMC6180995

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.