Evidence map›Paper›PMID 30363516›Full record

ArticleTranslational andrology and urology2018

Nitrocellulose tissue prints: an innovative approach to preparing high quality DNA and RNA from prostate biopsies without compromising the cores for pathology diagnosis.

Sandra M Gaston, William E Grizzle, Soroush Rais-Bahrami, Gary P Kearney

Abstract read
In one paragraph

Article in Translational andrology and urology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Sandra M GastonTufts Medical Center, Boston, MA, USA.
William E GrizzleDepartment of Pathology, University of Alabama at Birmingham, Birmingham, AL, USA.
Soroush Rais-BahramiUAB Comprehensive Cancer Center, University of Alabama at Birmingham, Birmingham, AL, USA.
Gary P KearneyHarvard Medical School, Boston, MA, USA.

Funding

XRAY CRYSTALLOGRAPHYP30CA013148 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI MICHAEL JAMES BERTRAM · 1985 to 2026
$165.9M
Collaborative Human Tissue NetworkUM1CA183728 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI GRIZZLE, WILLIAM E. · 2014 to 2018
$3.7M
Tissue Print Micropeels for Molecular Profiling CancerR21CA112220 · NCI · BETH ISRAEL DEACONESS MEDICAL CENTER · PI GASTON, SANDRA MARLENE · 2005 to 2006
$289k
NCI NIH HHS P30 CA013148NCI NIH HHS R21 CA112220NCI NIH HHS UM1 CA183728
6 · The paper itself

Abstract

Much of the research that has been done on prostate cancer tissue biomarkers has relied on radical prostatectomies for biospecimens. However, it is well recognized that important groups of patients are under-represented or missing entirely from biorepository collections of radical prostatectomy specimens. Using prostate biopsy tissues for molecular biomarker research significantly expands the range of available patients to include men whose biopsies show no cancer as well as men who are treated non-surgically or who choose active surveillance. However, one of the challenges of biopsy-based biomarker research is the limited amount of tissue that can be obtained from each core. To address this challenge, we have developed and fully implemented innovative biopsy tissue print technologies that allow us to obtain high quality RNA and DNA from each biopsy core without compromising the specimen for a pathologic diagnosis. Prostate biopsy tissue print samples have been successfully utilized for gene expression profiling, genotyping, DNA methylation and sequencing analyses. Emerging biopsy tissue print applications include studies using viable cells to study tumor metabolism and drug response.

Indexed as

molecular biomarkersprostate biopsyTissue print

Identifiers

PMID30363516
PMCPMC6178309

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.