Evidence map›Paper›PMID 30362291›Full record

ArticleMolecular ecology resources2019

Metapop: An individual-based model for simulating the evolution of tree populations in spatially and temporally heterogeneous landscapes.

Jean-Paul Soularue, Armel Thöni, Léo Arnoux, Valérie Le Corre, Antoine Kremer

Abstract read
In one paragraph

Article in Molecular ecology resources, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Jean-Paul SoularueBIOGECO, INRA, Univ. Bordeaux, Cestas, France.
Armel ThöniBIOGECO, INRA, Univ. Bordeaux, Cestas, France.
Léo ArnouxBIOGECO, INRA, Univ. Bordeaux, Cestas, France.
Valérie Le CorreINRA - UMR1347 Agroécologie, Dijon, France.
Antoine KremerBIOGECO, INRA, Univ. Bordeaux, Cestas, France.

Funding

Advanced Grant Project TREEPEACE #FP7-339728FP7 Ideas: European Research CouncilFrench National Research Agency (ANR), Cluster of Excellence COTE (ANR-10-LABX-45) and Research project ANR MeCC (ANR-13-ADAP-006_02)
6 · The paper itself

Abstract

Metapop is a stochastic individual-based simulation program. It uses quantitative genetics theory to produce an explicit description of the typical life cycle of monoecious and hermaphroditic plant species. Genome structure, the relationship between genotype and phenotype, and the effects of landscape heterogeneity on each individual can be finely parameterized by the user. Unlike most existing simulation packages, Metapop can simulate phenotypic plasticity, which may have a genetic component, and assortative mating, two important features of tree species. Each simulation is parameterized through text files, and raw data are generated recurrently, describing the allelic state of each quantitative trait locus involved in phenotypic variability. The data can be generated in Genepop or Fstat format, and may thus be analysed with other existing packages. Metapop also automatically computes a range of populations statistics, enabling the user to monitor evolutionary dynamics directly, from gene to metapopulation level.

Indexed as

GenotypePhenotypeSoftwareComputational BiologyComputer SimulationGenetics, PopulationSpatio-Temporal AnalysisTreesassortative matingforest treeslandscape heterogeneityphenotypic plasticityquantitative geneticssimulationstochastic individual-based modelling

Identifiers

PMID30362291
PMCPMC6469578

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.