Evidence map›Paper›PMID 30361512›Full record

ArticleNature communications2018

RhoGAP domain-containing fusions and PPAPDC1A fusions are recurrent and prognostic in diffuse gastric cancer.

Hanna Yang, Dongwan Hong, Soo Young Cho, Young Soo Park, Woo Ri Ko, Ju Hee Kim, Hoon Hur, Jongkeun Lee, Su-Jin Kim, Sun Young Kwon and 13 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed, 1 pooled it
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 1 synthesis or guideline pooled it, 40 citations in OpenAlex.

  1. The Significance of theFrontiers in oncology · 2020
    Pooled it
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. Review
  11. Review
  12. Early gastric cancer with RhoGAP fusion is linked to frequent nodal metastasis and a part of microtubular-mucocellular histology.Gastric cancer : official journal of the International Gastric Cancer Association and the Japanese Gastric Cancer Association · 2024
    Article
  13. Article
  14. Claudin 18.2 as a novel therapeutic target.Nature reviews. Clinical oncology · 2024
    Review
  15. A novel ARIH1::BRAF fusion in a glioma.Journal of neuropathology and experimental neurology · 2023
    Article
  16. Article
  17. Article
  18. Gastric cancer and genomics: review of literature.Journal of gastroenterology · 2022
    Review
  19. Fixing the GAP: The role of RhoGAPs in cancer.European journal of cell biology · 2022
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 10 institutions in 3 countries.

Hanna YangNational Cancer Center, Goyang, Gyeonggi, 10408, Republic of Korea.ORCID http://orcid.org/0000-0003-1531-3037
Dongwan HongNational Cancer Center, Goyang, Gyeonggi, 10408, Republic of Korea.ORCID http://orcid.org/0000-0002-7816-1299
Soo Young ChoNational Cancer Center, Goyang, Gyeonggi, 10408, Republic of Korea.
Young Soo ParkDepartment of Pathology, Asan Medical Center, University of Ulsan College of Medicine, Seoul, Republic of Korea.
Woo Ri KoNational Cancer Center, Goyang, Gyeonggi, 10408, Republic of Korea.
Ju Hee KimNational Cancer Center, Goyang, Gyeonggi, 10408, Republic of Korea.
Hoon HurDepartment of Surgery, Ajou University School of Medicine, Suwon, 443-380, Republic of Korea.
Jongkeun LeeNational Cancer Center, Goyang, Gyeonggi, 10408, Republic of Korea.
Su-Jin KimDepartment of Pathology, Dong-A University College of Medicine, Busan, 602-812, Republic of Korea.
Sun Young KwonDepartment of Pathology, Keimyung University School of Medicine, Daegu, 41931, Republic of Korea.
Jae-Hyuk LeeDepartment of Pathology, Chonnam National University Medical School, Gwangju, 501-746, Republic of Korea.
Do Youn ParkDepartment of Pathology and BioMedical Research Institute, Pusan National University Hospital and Pusan National University School of Medicine, Busan, 602-739, Republic of Korea.
Kyu Sang SongDepartment of Pathology, School of Medicine, Chungnam National University, Daejeon, 301-747, Republic of Korea.
Heekyung ChangDepartment of Pathology, Kosin University College of Medicine, Busan, 49267, Republic of Korea.
Min-Hee RyuDepartment of Oncology, Asan Medical Center, University of Ulsan College of Medicine, Seoul, 138-736, Republic of Korea.
Kye Soo ChoNational Cancer Center, Goyang, Gyeonggi, 10408, Republic of Korea.
Jeong Won KangNational Cancer Center, Goyang, Gyeonggi, 10408, Republic of Korea.
Myeong-Cherl KookNational Cancer Center, Goyang, Gyeonggi, 10408, Republic of Korea.ORCID http://orcid.org/0000-0002-3435-3301
Nina ThiessenBritish Columbia Cancer Agency, Vancouver, BC, V5Z 1L3, Canada.
An HeBritish Columbia Cancer Agency, Vancouver, BC, V5Z 1L3, Canada.
Andy MungallBritish Columbia Cancer Agency, Vancouver, BC, V5Z 1L3, Canada.
Sang-Uk HanDepartment of Surgery, Ajou University School of Medicine, Suwon, 443-380, Republic of Korea.
Hark Kyun KimNational Cancer Center, Goyang, Gyeonggi, 10408, Republic of Korea. hkim@ncc.re.kr.
National Cancer Center · KRUlsan College · KRAjou University · KRBC Cancer Agency · CAChonnam National University · KRChungnam National University · KRDong-A University · KRKeimyung University · KRKosin University · KRNational Cancer Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We conducted an RNA sequencing study to identify novel gene fusions in 80 discovery dataset tumors collected from young patients with diffuse gastric cancer (DGC). Twenty-five in-frame fusions are associated with DGC, three of which (CLDN18-ARHGAP26, CTNND1-ARHGAP26, and ANXA2-MYO9A) are recurrent in 384 DGCs based on RT-PCR. All three fusions contain a RhoGAP domain in their 3' partner genes. Patients with one of these three fusions have a significantly worse prognosis than those without. Ectopic expression of CLDN18-ARHGAP26 promotes the migration and invasion capacities of DGC cells. Parallel targeted RNA sequencing analysis additionally identifies TACC2-PPAPDC1A as a recurrent and poor prognostic in-frame fusion. Overall, PPAPDC1A fusions and in-frame fusions containing a RhoGAP domain clearly define the aggressive subset (7.5%) of DGCs, and their prognostic impact is greater than, and independent of, chromosomal instability and CDH1 mutations. Our study may provide novel genomic insights guiding future strategies for managing DGCs.

Indexed as

AdultBase SequenceCell AggregationCell Line, TumorCell ProliferationFemaleGTPase-Activating ProteinsHumansMaleMiddle AgedOncogene Proteins, FusionPhosphatidate PhosphatasePrognosisProtein DomainsSequence Analysis, RNAStomach NeoplasmsGTPase-Activating ProteinsOncogene Proteins, FusionPhosphatidate PhosphatasePLPP4 protein, humanrho GTPase-activating protein

Identifiers

PMID30361512
PMCPMC6202325
OpenAlexW2897199048

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.