Evidence map›Paper›PMID 30360534›Full record

ArticleInternational journal of environmental research and public health2018

Whole Genome Transcriptome Analysis of the Association between Obesity and Triple-Negative Breast Cancer in Caucasian Women.

Tarun K K Mamidi, Jiande Wu, Paul B Tchounwou, Lucio Miele, Chindo Hicks

Open access · goldAbstract read
In one paragraph

Article in International journal of environmental research and public health, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Review
  3. The Association of Modifiable Breast Cancer Risk Factors and Somatic Genomic Alterations in Breast Tumors: The Cancer Genome Atlas Network.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2020
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Tarun K K MamidiDepartment of Genetics, Louisiana State University Health Sciences Center, School of Medicine, 533 Bolivar Street, New Orleans, LA 70112, USA. tmamid@lsuhsc.edu.ORCID 0000-0002-9484-257X
Jiande WuDepartment of Genetics, Louisiana State University Health Sciences Center, School of Medicine, 533 Bolivar Street, New Orleans, LA 70112, USA. jwu2@lsuhsc.edu.
Paul B TchounwouNIH/NIMHD RCMI Center for Environmental Health, Jackson State University, 1400 Lynch Street, Box 18750, Jackson, MS 39217, USA. paul.b.tchounwou@jsums.edu.ORCID 0000-0002-3407-6674
Lucio MieleDepartment of Genetics, Louisiana State University Health Sciences Center, School of Medicine, 533 Bolivar Street, New Orleans, LA 70112, USA. lmiele@lsuhsc.edu.
Chindo HicksDepartment of Genetics, Louisiana State University Health Sciences Center, School of Medicine, 533 Bolivar Street, New Orleans, LA 70112, USA. chick3@lsuhsc.edu.
Louisiana State University Health Sciences Center New Orleans · USJackson State University · US

Funding

Tracking & Evaluation CoreU54GM104940 · NIGMS · LSU PENNINGTON BIOMEDICAL RESEARCH CTR · PI TERRY C DAVIS · 2012 to 2026
$69.1M
STEERING COMMITTEEU54MD008149 · NIMHD · MOREHOUSE SCHOOL OF MEDICINE · PI OFILI, ELIZABETH O. · 2012 to 2018
$21.1M
RCMI-Center for Environmental HealthG12MD007581 · NIMHD · JACKSON STATE UNIVERSITY · PI TCHOUNWOU, PAUL B. · 2012 to 2017
$11.2M
Understanding and Addressing Cancer Health Disparities in LouisianaP20CA233374 · NCI · LSU HEALTH SCIENCES CENTER · PI ZEA, ARNOLD H · 2018 to 2020
$2.9M
Pilot ProjectP20CA202922 · NCI · LSU HEALTH SCIENCES CENTER · PI GREGORY, PAULA ELIZABETH, MIELE, LUCIO · 2017 to 2020
$987k
NCI NIH HHS P20 CA202922NCI NIH HHS P20 CA233374NIGMS NIH HHS U54 GM104940NIMHD NIH HHS G12 MD007581NIMHD NIH HHS U54 MD008149
6 · The paper itself

Abstract

backgroundTriple-negative breast cancer (TNBC) is the most aggressive form of breast cancer, with poor outcomes. The molecular basis of TNBC remains poorly understood. The objective of this exploratory study was to investigate the association between obesity and TNBC in premenopausal and postmenopausal Caucasian women using transcription profiling.

methodsWe compared gene expression levels of tumor samples drawn from normal weight, overweight, and obese pre and postmenopausal women diagnosed with TNBC. We performed hierarchical clustering to assess similarity in patterns of gene expression profiles, and conducted network and pathway analysis to identify molecular networks and biological pathways.

resultsWe discovered gene signatures distinguishing normal weight from obese, normal weight from overweight, and overweight from obese individuals in both premenopausal and postmenopausal women. The analysis revealed molecular networks and biological pathways associating obesity with TNBC. The discovered pathways included the unfolded protein response, endoplasmic reticulum stress, B cell receptor, and autophagy signaling pathways in obese premenopausal women; and the integrin, axonal guidance, ERK/MAPK (extracellular-signal-regulated kinase/mitogen activated protein kinase) and glutathione biosynthesis signaling pathways in obese postmenopausal women.

conclusionsThe results suggest that both overweight and obese status are associated with TNBC, highlighting the need for conformation of these results in independent studies.

Indexed as

Gene Expression ProfilingAdultFemaleGene Regulatory NetworksHumansObesityOverweightSignal TransductionTriple Negative Breast NeoplasmsWhite Peoplegene expressionobesitytriple-negative breast cancer

Identifiers

PMID30360534
PMCPMC6265882
OpenAlexW2790825827

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.