Evidence map›Paper›PMID 30358994›Full record

ArticleBiochemistry2018

Functional and Structural Resilience of the Active Site Loop in the Evolution of Plasmodium Lactate Dehydrogenase.

Jacob D Wirth, Jeffrey I Boucher, Joseph R Jacobowitz, Scott Classen, Douglas L Theobald

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Expression, Purification, and Characterization ofInternational journal of molecular sciences · 2023
    Article
  5. Article
  6. Article
  7. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Jacob D WirthDepartment of Biochemistry , Brandeis University , Waltham , Massachusetts 02454 , United States.
Jeffrey I BoucherDepartment of Biochemistry , Brandeis University , Waltham , Massachusetts 02454 , United States.
Joseph R JacobowitzDepartment of Biochemistry , Brandeis University , Waltham , Massachusetts 02454 , United States.
Scott ClassenDepartment of Biochemistry , Brandeis University , Waltham , Massachusetts 02454 , United States.
Douglas L TheobaldDepartment of Biochemistry , Brandeis University , Waltham , Massachusetts 02454 , United States.ORCID 0000-0002-2695-8343
Brandeis University · US

Funding

Macromolecular Structure MechanismT32GM007596 · NIGMS · BRANDEIS UNIVERSITY · PI OPRIAN, DANIEL D · 1985 to 2019
$4.5M
Evolution of enzyme structure and function viewed at atomic resolutionR01GM096053 · NIGMS · BRANDEIS UNIVERSITY · PI Douglas Lowell Theobald · 2011 to 2026
$3.6M
Quantitative Biology: a Graduate Curriculum Linking the Physical and Biomedical ST32EB009419 · NIBIB · BRANDEIS UNIVERSITY · PI GELLES, JEFF, KONDEV, JANE · 2009 to 2018
$2.8M
MINOS (Macromolecular Insights on Nucleic acids Optimized by Scattering)R01GM105404 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI TAINER, JOHN A. · 2012 to 2015
$2.1M
Empirically testing the accuracy and bias of ancestral protein resurrection methodsR01GM132499 · NIGMS · BRANDEIS UNIVERSITY · PI THEOBALD, DOUGLAS LOWELL · 2019 to 2022
$1.4M
NIBIB NIH HHS T32 EB009419NIGMS NIH HHS R01 GM096053NIGMS NIH HHS R01 GM105404NIGMS NIH HHS R01 GM132499NIGMS NIH HHS T32 GM007596
6 · The paper itself

Abstract

The malarial pathogen Plasmodium falciparum ( Pf) is a member of the Apicomplexa, which independently evolved a highly specific lactate dehydrogenase (LDH) from an ancestral malate dehydrogenase (MDH) via a five-residue insertion in a key active site loop. PfLDH is widely considered an attractive drug target because of its unique active site. The conservation of the apicomplexan loop suggests that a precise insertion sequence was required for the evolution of LDH specificity. Aside from a single critical tryptophan, W107f, the functional and structural roles of residues in the loop are currently unknown. Here we show that the loop is remarkably robust to mutation, as activity is resilient to radical perturbations of both loop identity and length. Thus, alternative insertions could have evolved LDH specificity as long as they contained a tryptophan in the proper location. PfLDH likely has great potential to develop resistance to drugs designed to target its distinctive active site loop.

Indexed as

Protein ConformationAmino Acid SequenceBinding SitesCatalytic DomainCrystallography, X-RayL-Lactate DehydrogenaseModels, MolecularMutagenesis, Site-DirectedMutationPhylogenyPlasmodium falciparumSequence HomologyL-Lactate Dehydrogenase

Identifiers

PMID30358994
PMCPMC6247789
OpenAlexW2886885320

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.