Evidence map›Paper›PMID 30358166›Full record

ArticleObesity (Silver Spring, Md.)2018

Gene Coexpression Networks in Whole Blood Implicate Multiple Interrelated Molecular Pathways in Obesity in People with Asthma.

Damien C Croteau-Chonka, Zhanghua Chen, Kathleen C Barnes, Albino Barraza-Villarreal, Juan C Celedón, W James Gauderman, Frank D Gilliland, Jerry A Krishnan, Andrew H Liu, Stephanie J London and 8 more

Open access · bronzeAbstract read
In one paragraph

Article in Obesity (Silver Spring, Md.), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 14 citations in OpenAlex.

  1. Review
  2. Article
  3. The impact of obesity on immune function in pediatric asthma.Current opinion in allergy and clinical immunology · 2021
    Review
  4. Article
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 10 institutions in 2 countries.

Damien C Croteau-ChonkaChanning Division of Network Medicine, Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, Massachusetts, USA.ORCID 0000-0003-3466-1846
Zhanghua ChenDivision of Environmental Health, Department of Preventive Medicine, Keck School of Medicine, University of Southern California, Los Angeles, California, USA.
Kathleen C BarnesDivision of Biomedical Informatics and Personalized Medicine, Department of Medicine, University of Colorado School of Medicine, Anschutz Medical Campus, Aurora, Colorado, USA.
Albino Barraza-VillarrealNational Institute of Public Health, Cuernavaca, Morelos, México.ORCID 0000-0002-9020-4175
Juan C CeledónDivision of Pulmonary Medicine, Allergy and Immunology, Children's Hospital of Pittsburgh of the University of Pittsburgh Medical Center, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.ORCID 0000-0002-6139-5320
W James GaudermanDivision of Biostatistics, Department of Preventive Medicine, Keck School of Medicine, University of Southern California, Los Angeles, California, USA.
Frank D GillilandDivision of Environmental Health, Department of Preventive Medicine, Keck School of Medicine, University of Southern California, Los Angeles, California, USA.ORCID 0000-0002-9033-7269
Jerry A KrishnanDivision of Pulmonary, Critical Care, Sleep, and Allergy, Department of Medicine, University of Illinois at Chicago, Chicago, Illinois, USA.
Andrew H LiuDivision of Allergy and Clinical Immunology, Department of Pediatrics, National Jewish Health and University of Colorado School of Medicine, Denver, Colorado, USA.
Stephanie J LondonDivision of Intramural Research, Department of Health and Human Services, National Institute of Environmental Health Sciences, National Institutes of Health, Durham, North Carolina, USA.ORCID 0000-0003-4911-5290
Fernando D MartinezArizona Respiratory Center and BIO5 Institute, University of Arizona, Tucson, Arizona, USA.ORCID 0000-0001-6094-2727
Joshua MillsteinDivision of Biostatistics, Department of Preventive Medicine, Keck School of Medicine, University of Southern California, Los Angeles, California, USA.
Edward T NaureckasSection of Pulmonary and Critical Care Medicine, Department of Medicine, University of Chicago, Chicago, Illinois, USA.
Dan L NicolaeDepartment of Human Genetics, University of Chicago, Chicago, Illinois, USA.
Steven R WhiteSection of Pulmonary and Critical Care Medicine, Department of Medicine, University of Chicago, Chicago, Illinois, USA.
Carole OberDepartment of Human Genetics, University of Chicago, Chicago, Illinois, USA.
Scott T WeissChanning Division of Network Medicine, Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, Massachusetts, USA.ORCID 0000-0001-7196-303X
Benjamin A RabyChanning Division of Network Medicine, Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, Massachusetts, USA.ORCID 0000-0003-2206-5748
University of Chicago · USUniversity of Southern California · USBrigham and Women's Hospital · USChildren's Hospital of Pittsburgh · USInstituto Nacional de Salud Pública · MXNational Institutes of Health · USNational Jewish Health · USUniversity of Arizona · USUniversity of Colorado Anschutz Medical Campus · USUniversity of Illinois Chicago · US

Funding

SOUTHWEST ENVIRONMENTAL HEALTH SCIENCES CENTERP30ES006694 · NIEHS · UNIVERSITY OF ARIZONA · PI DEAN BILLHEIMER · 1994 to 2026
$36.7M
Statistical Methods for Integrative Genomics in CancerP01CA196569 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI Paul Marjoram · 2016 to 2026
$25.5M
Systems Biology of Airway DiseaseP01HL132825 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI WEISS, SCOTT T · 2016 to 2020
$12.6M
The Asthma BioRepository for Integrative Genomics ResearchRC2HL101543 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI RABY, BENJAMIN ALEXANDER, WEISS, SCOTT T · 2009 to 2010
$8.3M
Genetics and Gene Expression Profiling in AsthmaR01HL086601 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI RABY, BENJAMIN ALEXANDER · 2007 to 2015
$6.8M
The Integrative Genomics of Acute Asthma ControlR01HL118455 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI MILLSTEIN, JOSHUA, RABY, BENJAMIN ALEXANDER · 2014 to 2024
$6.5M
The Functional Consequences of the 17q12 Asthma Susceptibility LocusR01HL123546 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI RABY, BENJAMIN ALEXANDER · 2015 to 2018
$3.4M
Weight loss-induced modification of the genomic network underlying obese asthmaK01HL127265 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI CROTEAU-CHONKA, DAMIEN C. · 2015 to 2019
$844k
NCI NIH HHS P01 CA196569NHLBI NIH HHS K01 HL127265NHLBI NIH HHS P01 HL132825NHLBI NIH HHS R01 HL086601NHLBI NIH HHS R01 HL118455NHLBI NIH HHS R01 HL123546NHLBI NIH HHS RC2 HL101543NIEHS NIH HHS P30 ES006694
6 · The paper itself

Abstract

objectiveAsthmatic children who develop obesity through adolescence have poorer disease outcomes compared with those who do not. This study aimed to characterize the biology of childhood asthma complicated by adult obesity.

methodsGene expression networks are powerful statistical tools for characterizing human disease that leverage the putative coregulatory relationships of genes to infer relevant biological pathways. Weighted gene coexpression network analysis of gene expression data was performed in whole blood from 514 adult asthmatic subjects. Then, module preservation and association replication analyses were performed in 418 subjects from two independent asthma cohorts (one pediatric and one adult).

resultsA multivariate model was identified in which three gene coexpression network modules were associated with incident obesity in the discovery cohort (each P < 0.05). Two module memberships were enriched for genes in pathways related to platelets, integrins, extracellular matrix, smooth muscle, NF-κB signaling, and Hedgehog signaling. The network structures of each of the obesity modules were significantly preserved in both replication cohorts (permutation P = 9.999E-05). The corresponding module gene sets were significantly enriched for differential expression in subjects with obesity in both replication cohorts (each P < 0.05).

conclusionsThe gene coexpression network profiles thus implicate multiple interrelated pathways in the biology of an important endotype of asthma with obesity.

Indexed as

AdultAsthmaChildChild, PreschoolCohort StudiesFemaleGene ExpressionHumansMaleObesityYoung Adult

Identifiers

PMID30358166
PMCPMC6262830
OpenAlexW2898256930

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.