ArticleNucleic acids research2019
Genomes OnLine database (GOLD) v.7: updates and new features.
Article in Nucleic acids research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 97 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
97 citing papers in PubMed.
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- Global compositional and functional states of the human gut microbiome in health and disease.Genome research · 2024Article
- Community dynamics and metagenomic analyses reveal Bacteroidota's role in widespread enzymatic Fucus vesiculosus cell wall degradation.Scientific reports · 2024Article
- Robust expansion of phylogeny for fast-growing genome sequence data.PLoS computational biology · 2024Article
- Functional guilds and drivers of diversity in seaweed-associated bacteria.FEMS microbes · 2024Article
- iPHoP: An integrated machine learning framework to maximize host prediction for metagenome-derived viruses of archaea and bacteria.PLoS biology · 2023Article
- Standardized naming of microbiome samples in Genomes OnLine Database.Database : the journal of biological databases and curation · 2023Article
- Article
- Twenty-five years of Genomes OnLine Database (GOLD): data updates and new features in v.9.Nucleic acids research · 2023Article
- Facilitating accessible, rapid, and appropriate processing of ancient metagenomic data with AMDirT.F1000Research · 2023Article
- Metagenomic survey reveals global distribution and evolution of microbial sialic acid catabolism.Frontiers in microbiology · 2023Article
- Genomic insights into the diversity of non-coding RNAs in Bacillus cereus sensu lato.Current genetics · 2022Article
- Sodalis ligni Strain 159R Isolated from an Anaerobic Lignin-Degrading Consortium.Microbiology spectrum · 2022Article
- Genome-scale metabolic network model of Eriocheir sinensis icrab4665 and nutritional requirement analysis.BMC genomics · 2022Article
- merlin, an improved framework for the reconstruction of high-quality genome-scale metabolic models.Nucleic acids research · 2022Article
- Thousands of small, novel genes predicted in global phage genomes.Cell reports · 2022Article
- Experimental evaluation of ecological principles to understand and modulate the outcome of bacterial strain competition in gut microbiomes.The ISME journal · 2022Article
- Metagenome-assembled genomes of phytoplankton microbiomes from the Arctic and Atlantic Oceans.Microbiome · 2022Article
- EnsembleFam: towards more accurate protein family prediction in the twilight zone.BMC bioinformatics · 2022Article
37 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
9 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The Genomes Online Database (GOLD) (https://gold.jgi.doe.gov) is an open online resource, which maintains an up-to-date catalog of genome and metagenome projects in the context of a comprehensive list of associated metadata. Information in GOLD is organized into four levels: Study, Biosample/Organism, Sequencing Project and Analysis Project. Currently GOLD hosts information on 33 415 Studies, 49 826 Biosamples, 313 324 Organisms, 215 881 Sequencing Projects and 174 454 Analysis Projects with a total of 541 metadata fields, of which 80 are based on controlled vocabulary (CV) terms. GOLD provides a user-friendly web interface to browse sequencing projects and launch advanced search tools across four classification levels. Users submit metadata on a wide range of Sequencing and Analysis Projects in GOLD before depositing sequence data to the Integrated Microbial Genomes (IMG) system for analysis. GOLD conforms with and supports the rules set by the Genomic Standards Consortium (GSC) Minimum Information standards. The current version of GOLD (v.7) has seen the number of projects and associated metadata increase exponentially over the years. This paper provides an update on the current status of GOLD and highlights the new features added over the last two years.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.