ArticleNucleic acids research2019
DDBJ update: the Genomic Expression Archive (GEA) for functional genomics data.
Article in Nucleic acids research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.
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Who cites it
25 citing papers in PubMed.
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- DDBJ update in 2025: system integration for global data-sharing including pathogen surveillance.Nucleic acids research · 2026Article
- jPOST environment accelerates the reuse and reanalysis of public proteome mass spectrometry data.Nucleic acids research · 2025Article
- Generation of Monosomy 21q Human iPS Cells by CRISPR/Cas9-Mediated Interstitial Megabase Deletion.Genes to cells : devoted to molecular & cellular mechanisms · 2025Article
- DDBJ update in 2023: the MetaboBank for metabolomics data and associated metadata.Nucleic acids research · 2024Article
- Data Mining of Microarray Datasets in Translational Neuroscience.Brain sciences · 2023Review
- Integrative multi-omics and systems bioinformatics in translational neuroscience: A data mining perspective.Journal of pharmaceutical analysis · 2023Review
- DNA Data Bank of Japan (DDBJ) update report 2022.Nucleic acids research · 2023Article
- DNA Data Bank of Japan (DDBJ) update report 2021.Nucleic acids research · 2022Article
- A comprehensive survey on computational learning methods for analysis of gene expression data.Frontiers in molecular biosciences · 2022Review
- Comparison of Oxidative and Hypoxic Stress Responsive Genes from Meta-Analysis of Public Transcriptomes.Biomedicines · 2021Article
- ARGEOS: A New Bioinformatic Tool for Detailed Systematics Search in GEO and ArrayExpress.Biology · 2021Article
- Multi-Omic Meta-Analysis of Transcriptomes and the Bibliome Uncovers Novel Hypoxia-Inducible Genes.Biomedicines · 2021Article
- Meta-Analysis of Oxidative Transcriptomes in Insects.Antioxidants (Basel, Switzerland) · 2021Article
- DDBJ update: streamlining submission and access of human data.Nucleic acids research · 2021Article
- Data Management of Sensitive Human Proteomics Data: Current Practices, Recommendations, and Perspectives for the Future.Molecular & cellular proteomics : MCP · 2021Article
- Open Data for Differential Network Analysis in Glioma.International journal of molecular sciences · 2020Article
- Meta-Analysis of Hypoxic Transcriptomes from Public Databases.Biomedicines · 2020Article
- IPD-IMGT/HLA Database.Nucleic acids research · 2020Article
Corrections and comments
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Authors and funding
4 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The Genomic Expression Archive (GEA) for functional genomics data from microarray and high-throughput sequencing experiments has been established at the DNA Data Bank of Japan (DDBJ) Center (https://www.ddbj.nig.ac.jp), which is a member of the International Nucleotide Sequence Database Collaboration (INSDC) with the US National Center for Biotechnology Information and the European Bioinformatics Institute. The DDBJ Center collects nucleotide sequence data and associated biological information from researchers and also services the Japanese Genotype-phenotype Archive (JGA) with the National Bioscience Database Center for collecting human data. To automate the submission process, we have implemented the DDBJ BioSample validator which checks submitted records, auto-corrects their format, and issues error messages and warnings if necessary. The DDBJ Center also operates the NIG supercomputer, prepared for analyzing large-scale genome sequences. We now offer a secure platform specifically to handle personal human genomes. This report describes database activities for INSDC and JGA over the past year, the newly launched GEA, submission, retrieval, and analysis services available in our supercomputer system and their recent developments.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.