Evidence map›Paper›PMID 30357245›Full record

ArticleLab on a chip2018

Diagnosis of traumatic brain injury using miRNA signatures in nanomagnetically isolated brain-derived extracellular vesicles.

J Ko, M Hemphill, Z Yang, E Sewell, Y J Na, D K Sandsmark, M Haber, S A Fisher, E A Torre, K C Svane and 6 more

Open access · greenAbstract read
In one paragraph

Article in Lab on a chip, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed, 2 pooled it
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 2 syntheses or guidelines pooled it, 89 citations in OpenAlex.

  1. Pooled it
  2. Nanotechnology in neurosurgery: a systematic review.Child's nervous system : ChNS : official journal of the International Society for Pediatric Neurosurgery · 2021
    Pooled it
  3. Trial
  4. Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Extracellular RNAs as Messengers and Early Biomarkers in Neurodegeneration.International journal of molecular sciences · 2025
    Review
  10. Review
  11. The Role of Nanotechnology in Understanding the Pathophysiology of Traumatic Brain Injury.Central nervous system agents in medicinal chemistry · 2025
    Review
  12. Article
  13. Article
  14. Review
  15. Review
  16. Review
  17. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 3 countries.

J KoDepartment of Bioengineering, University of Pennsylvania, Philadelphia, PA 19104, USA. daveissadore@gmail.com.ORCID 0000-0002-4941-4234
M HemphillDepartment of Bioengineering, University of Pennsylvania, Philadelphia, PA 19104, USA. daveissadore@gmail.com.
Z YangDepartment of Bioengineering, University of Pennsylvania, Philadelphia, PA 19104, USA. daveissadore@gmail.com.
E SewellDepartment of Bioengineering, University of Pennsylvania, Philadelphia, PA 19104, USA. daveissadore@gmail.com.
Y J NaDepartment of Medicine, Division of Nephrology, College of Physicians and Surgeons, Columbia University, New York, NY 10032, USA.
D K SandsmarkDepartment of Neurology, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA 19104, USA.
M HaberDepartment of Neurology, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA 19104, USA.
S A FisherDepartment of Biology, University of Pennsylvania, Philadelphia, PA 19104, USA.
E A TorreDepartment of Bioengineering, University of Pennsylvania, Philadelphia, PA 19104, USA. daveissadore@gmail.com.
K C SvaneDepartment of Cell Biology and Neuroscience, Rutgers, the State University of New Jersey, NJ 08854, USA.
A OmelchenkoDepartment of Cell Biology and Neuroscience, Rutgers, the State University of New Jersey, NJ 08854, USA.
B L FiresteinDepartment of Cell Biology and Neuroscience, Rutgers, the State University of New Jersey, NJ 08854, USA.ORCID 0000-0002-1679-3565
R Diaz-ArrastiaDepartment of Neurology, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA 19104, USA.
J KimDepartment of Biology, University of Pennsylvania, Philadelphia, PA 19104, USA and Department of Computer and Information Science, University of Pennsylvania, Philadelphia, PA 19104, USA.
D F MeaneyDepartment of Bioengineering, University of Pennsylvania, Philadelphia, PA 19104, USA. daveissadore@gmail.com and Department of Neurosurgery, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA 19104, USA.
D IssadoreDepartment of Bioengineering, University of Pennsylvania, Philadelphia, PA 19104, USA. daveissadore@gmail.com and Department of Electrical and Systems Engineering, University of Pennsylvania, Philadelphia, PA 19104, USA.ORCID 0000-0002-5461-8653
California University of Pennsylvania · USRutgers, The State University of New Jersey · USUniversity of Pennsylvania · USRoyal College of Physicians · GB

Funding

Transforming Research and Clinical Knowledge in Traumatic Brain InjuryU01NS086090 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI DIAZ-ARRASTIA, RAMON, GIACINO, JOSEPH THOMAS · 2013 to 2017
$19.1M
UMDNJ TRAINING GRANT IN BIOTECHNOLOGYT32GM008339 · NIGMS · RUTGERS THE ST UNIV OF NJ NEW BRUNSWICK · PI YARMUSH, MARTIN L · 1989 to 2019
$6.1M
A nanomagnetic platform technology to characterize traumatic brain injury using brain derived extracellular vesiclesR33MH118170 · NIMH · UNIVERSITY OF PENNSYLVANIA · PI ISSADORE, DAVID AARON · 2020 to 2022
$1.7M
Nanomagnetic isolation and sensing for mobile HIV-1 self-testingR61AI147406 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI ISSADORE, DAVID AARON · 2019 to 2021
$1.4M
Rapid unbiased isolation and in situ RNA analysis of circulating tumor cells using a magnetic micropore-based diagnostic chipR33CA206907 · NCI · UNIVERSITY OF PENNSYLVANIA · PI ISSADORE, DAVID AARON · 2017 to 2019
$1.1M
Natural History of Traumatic Microvascular InjuryK23NS104239 · NINDS · UNIVERSITY OF PENNSYLVANIA · PI SANDSMARK, DANIELLE KAYE · 2017 to 2021
$929k
A micro Hall chip for circulating microvesicle based cancer monitoringR21CA182336 · NCI · UNIVERSITY OF PENNSYLVANIA · PI ISSADORE, DAVID AARON · 2014 to 2016
$664k
A nanomagnetic platform technology to characterize traumatic brain injury using brain derived extracellular vesiclesR21MH118170 · NIMH · UNIVERSITY OF PENNSYLVANIA · PI ISSADORE, DAVID AARON · 2018 to 2019
$414k
NCI NIH HHS R21 CA182336NCI NIH HHS R33 CA206907NIAID NIH HHS R61 AI147406NIGMS NIH HHS T32 GM008339NIMH NIH HHS R21 MH118170NIMH NIH HHS R33 MH118170NINDS NIH HHS K23 NS104239NINDS NIH HHS U01 NS086090
6 · The paper itself

Abstract

The accurate diagnosis and clinical management of traumatic brain injury (TBI) is currently limited by the lack of accessible molecular biomarkers that reflect the pathophysiology of this heterogeneous disease. To address this challenge, we developed a microchip diagnostic that can characterize TBI more comprehensively using the RNA found in brain-derived extracellular vesicles (EVs). Our approach measures a panel of EV miRNAs, processed with machine learning algorithms to capture the state of the injured and recovering brain. Our diagnostic combines surface marker-specific nanomagnetic isolation of brain-derived EVs, biomarker discovery using RNA sequencing, and machine learning processing of the EV miRNA cargo to minimally invasively measure the state of TBI. We achieved an accuracy of 99% identifying the signature of injured vs. sham control mice using an independent blinded test set (N = 77), where the injured group consists of heterogeneous populations (injury intensity, elapsed time since injury) to model the variability present in clinical samples. Moreover, we successfully predicted the intensity of the injury, the elapsed time since injury, and the presence of a prior injury using independent blinded test sets (N = 82). We demonstrated the translatability in a blinded test set by identifying TBI patients from healthy controls (AUC = 0.9, N = 60). This approach, which can detect signatures of injury that persist across a variety of injury types and individual responses to injury, more accurately reflects the heterogeneity of human TBI injury and recovery than conventional diagnostics, opening new opportunities to improve treatment of traumatic brain injuries.

Indexed as

Magnetic PhenomenaAnimalsBiomarkersBrain Injuries, TraumaticExtracellular VesiclesHumansMachine LearningMiceMicroRNAsNanotechnologyBiomarkersMicroRNAs

Identifiers

PMID30357245
PMCPMC6334845
OpenAlexW2897805849

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.