Evidence map›Paper›PMID 30355800›Full record

ArticleScience translational medicine2018

Antibiotics induce sustained dysregulation of intestinal T cell immunity by perturbing macrophage homeostasis.

Nicholas A Scott, Anna Andrusaite, Peter Andersen, Melissa Lawson, Cristina Alcon-Giner, Charlotte Leclaire, Shabhonam Caim, Gwenaelle Le Gall, Tovah Shaw, James P R Connolly and 15 more

Open access · greenAbstract read
In one paragraph

Article in Science translational medicine, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 187 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
187citing papers in PubMed, 2 pooled it
9.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

187 citing papers in PubMed, 2 syntheses or guidelines pooled it, 319 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Review
  5. Article
  6. Antibiotics promote susceptibility tobioRxiv : the preprint server for biology · 2026
    Article
  7. Article
  8. Article
  9. Lipid metabolism in homeostasis and disease.Signal transduction and targeted therapy · 2026
    Review
  10. Article
  11. Article
  12. Microbiology spectrum · 2026
    Article
  13. Article
  14. Review
  15. Review
  16. Review
  17. Review
  18. Caerin 1.1/1.9 peptides controlFrontiers in microbiology · 2026
    Article
  19. Review
  20. Article

127 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

25 authors at 6 institutions in 2 countries.

Nicholas A ScottLydia Becker Institute of Immunology and Inflammation, University of Manchester, Manchester M13 9PT, UK.ORCID 0000-0003-3161-3216
Anna AndrusaiteCentre for Immunobiology, Institute of Infection, Immunity and Inflammation, College of Medicine, Veterinary Medicine and Life Sciences, University of Glasgow, Glasgow G12 8TA, UK.ORCID 0000-0001-8264-3082
Peter AndersenDepartment of Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.
Melissa LawsonQuadram Institute Bioscience, Norwich Research Park, Norwich NR4 7UA, UK.ORCID 0000-0001-9882-8663
Cristina Alcon-GinerQuadram Institute Bioscience, Norwich Research Park, Norwich NR4 7UA, UK.
Charlotte LeclaireQuadram Institute Bioscience, Norwich Research Park, Norwich NR4 7UA, UK.
Shabhonam CaimQuadram Institute Bioscience, Norwich Research Park, Norwich NR4 7UA, UK.
Gwenaelle Le GallQuadram Institute Bioscience, Norwich Research Park, Norwich NR4 7UA, UK.ORCID 0000-0002-1379-2196
Tovah ShawLydia Becker Institute of Immunology and Inflammation, University of Manchester, Manchester M13 9PT, UK.ORCID 0000-0002-8107-2836
James P R ConnollyCentre for Immunobiology, Institute of Infection, Immunity and Inflammation, College of Medicine, Veterinary Medicine and Life Sciences, University of Glasgow, Glasgow G12 8TA, UK.
Andrew J RoeCentre for Immunobiology, Institute of Infection, Immunity and Inflammation, College of Medicine, Veterinary Medicine and Life Sciences, University of Glasgow, Glasgow G12 8TA, UK.ORCID 0000-0003-3698-6134
Hannah WesselCentre for Immunobiology, Institute of Infection, Immunity and Inflammation, College of Medicine, Veterinary Medicine and Life Sciences, University of Glasgow, Glasgow G12 8TA, UK.
Alberto Bravo-BlasCentre for Immunobiology, Institute of Infection, Immunity and Inflammation, College of Medicine, Veterinary Medicine and Life Sciences, University of Glasgow, Glasgow G12 8TA, UK.ORCID 0000-0002-1758-3367
Carolyn A ThomsonCentre for Immunobiology, Institute of Infection, Immunity and Inflammation, College of Medicine, Veterinary Medicine and Life Sciences, University of Glasgow, Glasgow G12 8TA, UK.ORCID 0000-0003-3906-7539
Verena KästeleCentre for Immunobiology, Institute of Infection, Immunity and Inflammation, College of Medicine, Veterinary Medicine and Life Sciences, University of Glasgow, Glasgow G12 8TA, UK.ORCID 0000-0003-0433-6989
Ping WangLydia Becker Institute of Immunology and Inflammation, University of Manchester, Manchester M13 9PT, UK.ORCID 0000-0003-1940-0269
Daniel A PetersonDepartment of Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.
Allison BancroftLydia Becker Institute of Immunology and Inflammation, University of Manchester, Manchester M13 9PT, UK.ORCID 0000-0001-9713-9276
Xuhang LiDepartment of Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.ORCID 0000-0002-8084-2448
Richard GrencisLydia Becker Institute of Immunology and Inflammation, University of Manchester, Manchester M13 9PT, UK.ORCID 0000-0002-7592-0085
Allan McI MowatCentre for Immunobiology, Institute of Infection, Immunity and Inflammation, College of Medicine, Veterinary Medicine and Life Sciences, University of Glasgow, Glasgow G12 8TA, UK.ORCID 0000-0001-9389-3079
Lindsay J HallQuadram Institute Bioscience, Norwich Research Park, Norwich NR4 7UA, UK.ORCID 0000-0001-8938-5709
Mark A TravisLydia Becker Institute of Immunology and Inflammation, University of Manchester, Manchester M13 9PT, UK.ORCID 0000-0002-8485-2272
Simon W F MillingCentre for Immunobiology, Institute of Infection, Immunity and Inflammation, College of Medicine, Veterinary Medicine and Life Sciences, University of Glasgow, Glasgow G12 8TA, UK.ORCID 0000-0003-4384-5516
Elizabeth R MannLydia Becker Institute of Immunology and Inflammation, University of Manchester, Manchester M13 9PT, UK. elizabeth.mann@manchester.ac.uk.ORCID 0000-0002-0803-0357
University of Glasgow · GBNorwich Research Park · GBManchester Academic Health Science Centre · GBJohns Hopkins University · USWellcome Centre for Cell-Matrix Research · GBUniversity of Manchester · GB

Funding

BASIC SCIENCE RESEARCH IN DIGESTIVE DISEASEST32DK007632 · NIDDK · JOHNS HOPKINS UNIVERSITY · PI DONOWITZ, MARK · 1989 to 2018
$5.4M
Biotechnology and Biological Sciences Research Council BB/J004529/1Biotechnology and Biological Sciences Research Council BB/R003114/1Biotechnology and Biological Sciences Research Council BBS/E/F/00044409Biotechnology and Biological Sciences Research Council BBS/E/F/000PR10353Biotechnology and Biological Sciences Research Council BBS/E/F/000PR10356Medical Research Council MR/K021095/1Medical Research Council MR/M00242X/1Medical Research Council MR/N023625/1NIDDK NIH HHS T32 DK007632Wellcome Trust 097820/Z/11/BWellcome Trust 100974Wellcome Trust 203128Wellcome Trust 206206
6 · The paper itself

Abstract

Macrophages in the healthy intestine are highly specialized and usually respond to the gut microbiota without provoking an inflammatory response. A breakdown in this tolerance leads to inflammatory bowel disease (IBD), but the mechanisms by which intestinal macrophages normally become conditioned to promote microbial tolerance are unclear. Strong epidemiological evidence linking disruption of the gut microbiota by antibiotic use early in life to IBD indicates an important role for the gut microbiota in modulating intestinal immunity. Here, we show that antibiotic use causes intestinal macrophages to become hyperresponsive to bacterial stimulation, producing excess inflammatory cytokines. Re-exposure of antibiotic-treated mice to conventional microbiota induced a long-term, macrophage-dependent increase in inflammatory T helper 1 (T

Indexed as

AnimalsAnti-Bacterial AgentsButyratesCytokinesFatty AcidsGastrointestinal MicrobiomeHomeostasisImmunity, InnateInflammationIntestinesLipopolysaccharidesMacrophagesMice, Inbred C57BLReceptors, CCR2Th1 CellsT-LymphocytesAnti-Bacterial AgentsButyratesCytokinesFatty AcidsLipopolysaccharidesReceptors, CCR2

Identifiers

PMID30355800
PMCPMC6548564
OpenAlexW2898338982

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.