Evidence map›Paper›PMID 30355680›Full record

ArticleJournal of virology2019

Plasticity of Amino Acid Residue 145 Near the Receptor Binding Site of H3 Swine Influenza A Viruses and Its Impact on Receptor Binding and Antibody Recognition.

Jefferson J S Santos, Eugenio J Abente, Adebimpe O Obadan, Andrew J Thompson, Lucas Ferreri, Ginger Geiger, Ana S Gonzalez-Reiche, Nicola S Lewis, David F Burke, Daniela S Rajão and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 28 citations in OpenAlex.

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  13. Potential Antigenic Mismatch of the H3N2 Component of the 2019 Southern Hemisphere Influenza Vaccine.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2020
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 2 countries.

Jefferson J S SantosDepartment of Population Health, Poultry Diagnostic and Research Center, University of Georgia, Athens, Georgia, USA.ORCID 0000-0001-5895-4163
Eugenio J AbenteVirus and Prion Research Unit, National Animal Disease Center, Agricultural Research Service, U.S. Department of Agriculture, Ames, Iowa, USA.
Adebimpe O ObadanDepartment of Population Health, Poultry Diagnostic and Research Center, University of Georgia, Athens, Georgia, USA.
Andrew J ThompsonDepartment of Molecular Medicine and Immunology & Microbiology, The Scripps Research Institute, La Jolla, California, USA.ORCID 0000-0001-7865-1856
Lucas FerreriDepartment of Population Health, Poultry Diagnostic and Research Center, University of Georgia, Athens, Georgia, USA.
Ginger GeigerDepartment of Population Health, Poultry Diagnostic and Research Center, University of Georgia, Athens, Georgia, USA.
Ana S Gonzalez-ReicheDepartment of Population Health, Poultry Diagnostic and Research Center, University of Georgia, Athens, Georgia, USA.
Nicola S LewisDepartment of Pathobiology and Population Sciences, Royal Veterinary College, Hatfield, Hertfordshire, United Kingdom.
David F BurkeDepartment of Zoology, University of Cambridge, Cambridge, United Kingdom.
Daniela S RajãoDepartment of Population Health, Poultry Diagnostic and Research Center, University of Georgia, Athens, Georgia, USA.
James C PaulsonDepartment of Molecular Medicine and Immunology & Microbiology, The Scripps Research Institute, La Jolla, California, USA.
Amy L VincentVirus and Prion Research Unit, National Animal Disease Center, Agricultural Research Service, U.S. Department of Agriculture, Ames, Iowa, USA.
Daniel R PerezDepartment of Population Health, Poultry Diagnostic and Research Center, University of Georgia, Athens, Georgia, USA dperez1@uga.edu.ORCID 0000-0002-6569-5689
University of Georgia · USAgricultural Research Service · USScripps Research Institute · USRoyal Veterinary College · GBUniversity of Cambridge · GB

Funding

Influenza virus receptors on human airway epithelial cellsR01AI114730 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI PAULSON, JAMES C · 2015 to 2023
$5.1M
NIAID NIH HHS HHSN272201400008CNIAID NIH HHS R01 AI114730
6 · The paper itself

Abstract

The hemagglutinin (HA), a glycoprotein on the surface of influenza A virus (IAV), initiates the virus life cycle by binding to terminal sialic acid (SA) residues on host cells. The HA gradually accumulates amino acid substitutions that allow IAV to escape immunity through a mechanism known as antigenic drift. We recently confirmed that a small set of amino acid residues are largely responsible for driving antigenic drift in swine-origin H3 IAV. All identified residues are located adjacent to the HA receptor binding site (RBS), suggesting that substitutions associated with antigenic drift may also influence receptor binding. Among those substitutions, residue 145 was shown to be a major determinant of antigenic evolution. To determine whether there are functional constraints to substitutions near the RBS and their impact on receptor binding and antigenic properties, we carried out site-directed mutagenesis experiments at the single-amino-acid level. We generated a panel of viruses carrying substitutions at residue 145 representing all 20 amino acids. Despite limited amino acid usage in nature, most substitutions at residue 145 were well tolerated without having a major impact on virus replication

Indexed as

Amino Acid SubstitutionAnimalsAntibodies, ViralBinding SitesDogsGenetic DriftHEK293 CellsHemagglutinins, ViralHumansInfluenza A virusMadin Darby Canine Kidney CellsModels, MolecularMutagenesis, Site-DirectedPolysaccharidesProtein BindingSwineAntibodies, ViralHemagglutinins, ViralPolysaccharidesH3 subtypehemagglutinininfluenza vaccinesswine influenzavirus evolution

Identifiers

PMID30355680
PMCPMC6321904
OpenAlexW2896152302

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.