Evidence map›Paper›PMID 30355494›Full record

ArticleCell reports2018

Transcriptional Programming of Normal and Inflamed Human Epidermis at Single-Cell Resolution.

Jeffrey B Cheng, Andrew J Sedgewick, Alex I Finnegan, Paymann Harirchian, Jerry Lee, Sunjong Kwon, Marlys S Fassett, Justin Golovato, Matthew Gray, Ruby Ghadially and 16 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 175 papers.

0numbers the graph read from it
0cells of the map it votes in
175citing papers in PubMed
11.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

175 citing papers in PubMed, 313 citations in OpenAlex.

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  20. Emerging Roles of Ferroptosis in Skin Pathophysiology.The Journal of investigative dermatology · 2025
    Review

115 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

26 authors at 6 institutions in 2 countries.

Jeffrey B ChengDepartment of Dermatology, University of California, San Francisco and Veterans Affairs Medical Center, San Francisco, CA, USA.
Andrew J SedgewickNantomics, LLC, Culver City, CA, USA.
Alex I FinneganDepartment of Physics, Carl R. Woese Institute of Genomic Biology, University of Illinois at Urbana-Champaign, Champaign, IL, USA.
Paymann HarirchianDepartment of Dermatology, University of California, San Francisco and Veterans Affairs Medical Center, San Francisco, CA, USA.
Jerry LeeDepartment of Dermatology, University of California, San Francisco and Veterans Affairs Medical Center, San Francisco, CA, USA.
Sunjong KwonDepartment of Biomedical Engineering, OHSU Center for Spatial Systems Biomedicine, Portland, OR, USA.
Marlys S FassettDepartment of Dermatology, University of California, San Francisco, San Francisco, CA, USA.
Justin GolovatoNantomics, LLC, Culver City, CA, USA.
Matthew GrayNantomics, LLC, Culver City, CA, USA.
Ruby GhadiallyDepartment of Dermatology, University of California, San Francisco and Veterans Affairs Medical Center, San Francisco, CA, USA.
Wilson LiaoDepartment of Dermatology, University of California, San Francisco, San Francisco, CA, USA.
Bethany E Perez WhiteDepartment of Dermatology and Skin Tissue Engineering Core, Northwestern University, Chicago, IL, USA.
Theodora M MauroDepartment of Dermatology, University of California, San Francisco and Veterans Affairs Medical Center, San Francisco, CA, USA.
Thaddeus MullyDepartment of Pathology, University of California, San Francisco, San Francisco, CA, USA.
Esther A KimDepartment of Plastic Surgery, University of California, San Francisco, San Francisco, CA, USA.
Hani SbitanyDepartment of Plastic Surgery, University of California, San Francisco, San Francisco, CA, USA.
Isaac M NeuhausDepartment of Dermatology, University of California, San Francisco, San Francisco, CA, USA.
Roy C GrekinDepartment of Dermatology, University of California, San Francisco, San Francisco, CA, USA.
Siegrid S YuDepartment of Dermatology, University of California, San Francisco, San Francisco, CA, USA.
Joe W GrayDepartment of Biomedical Engineering, OHSU Center for Spatial Systems Biomedicine, Portland, OR, USA.
Elizabeth PurdomDepartment of Statistics, University of California, Berkeley, Berkeley, CA, USA.
Ralf PausCentre for Dermatology Research, University of Manchester, Manchester Academic Health Science Centre and NIHR Manchester Biomedical Research Centre, Manchester, UK; Department of Dermatology and Cutaneous Surgery, University of Miami Miller School of Medicine, Miami, FL, USA.
Charles J VaskeNantomics, LLC, Culver City, CA, USA.
Stephen C BenzNantomics, LLC, Culver City, CA, USA.
Jun S SongDepartment of Physics, Carl R. Woese Institute of Genomic Biology, University of Illinois at Urbana-Champaign, Champaign, IL, USA.
Raymond J ChoDepartment of Dermatology, University of California, San Francisco, San Francisco, CA, USA. Electronic address: raymond.cho@ucsf.edu.
University of California, San Francisco · USSan Francisco VA Medical Center · USUniversity of Illinois Urbana-Champaign · USNIHR Manchester Biomedical Research Centre · GBNorthwestern University · USUniversity of California, Berkeley · US

Funding

The Role of Keratinocytes as Independent ThermosensorsP30AR057216 · NIAMS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI PALLER, AMY S · 2009 to 2018
$6.0M
Predicting Transcriptional and Epigenetic Networks in Cancer from Sequencing DataR01CA163336 · NCI · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI Jun S Song · 2012 to 2026
$4.4M
MHC and KIR Region Genomics in PsoriasisU01AI119125 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LIAO, WILSON · 2015 to 2019
$3.5M
Pathogenesis and Therapy of Ichthyosis in Disorders of Lipid MetabolismR01AR061106 · NIAMS · NORTHERN CALIFORNIA INSTITUTE/RES/EDU · PI MAURO, THEODORA M · 2012 to 2022
$3.3M
ATP2A2-Regulated Keretinocyted Ca2+ Signaling MechanismsR01AR051930 · NIAMS · NORTHERN CALIFORNIA INSTITUTE/RES/EDU · PI MAURO, THEODORA M · 2006 to 2019
$3.2M
Role of DNA Methylation and Hydroxymethylation in Epidermal HomeostasisK08AR067243 · NIAMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CHENG, JEFFREY B · 2015 to 2019
$834k
NCI NIH HHS R01 CA163336NIAID NIH HHS U01 AI119125NIAMS NIH HHS K08 AR067243NIAMS NIH HHS P30 AR057216NIAMS NIH HHS R01 AR051930NIAMS NIH HHS R01 AR061106
6 · The paper itself

Abstract

Perturbations in the transcriptional programs specifying epidermal differentiation cause diverse skin pathologies ranging from impaired barrier function to inflammatory skin disease. However, the global scope and organization of this complex cellular program remain undefined. Here we report single-cell RNA sequencing profiles of 92,889 human epidermal cells from 9 normal and 3 inflamed skin samples. Transcriptomics-derived keratinocyte subpopulations reflect classic epidermal strata but also sharply compartmentalize epithelial functions such as cell-cell communication, inflammation, and WNT pathway modulation. In keratinocytes, ∼12% of assessed transcript expression varies in coordinate patterns, revealing undescribed gene expression programs governing epidermal homeostasis. We also identify molecular fingerprints of inflammatory skin states, including S100 activation in the interfollicular epidermis of normal scalp, enrichment of a CD1C

Indexed as

Single-Cell AnalysisTranscription, GeneticAmphiregulinBiomarkersCell AggregationCell CommunicationCell DifferentiationCell ProliferationEpidermisForeskinHair FollicleHumansInflammationKeratinocytesKineticsMaleAmphiregulinBiomarkersS100 ProteinsWnt Proteinsepidermiskeratinocytesingle-cell RNA-seqskin

Identifiers

PMID30355494
PMCPMC6367716
OpenAlexW2897926103

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.