Evidence map›Paper›PMID 30355302›Full record

ArticleBMC genomics2018

Genomic comparison of Trypanosoma conorhini and Trypanosoma rangeli to Trypanosoma cruzi strains of high and low virulence.

Katie R Bradwell, Vishal N Koparde, Andrey V Matveyev, Myrna G Serrano, João M P Alves, Hardik Parikh, Bernice Huang, Vladimir Lee, Oneida Espinosa-Alvarez, Paola A Ortiz and 3 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
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  4. ClinicalbioRxiv : the preprint server for biology · 2025
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  6. Pathogens (Basel, Switzerland) · 2025
    Review
  7. Article
  8. Article
  9. The ElusivePathogens (Basel, Switzerland) · 2023
    Review
  10. Frontiers in cellular and infection microbiology · 2022
    Article
  11. Review
  12. Review
  13. Article
  14. AssessingPathogens (Basel, Switzerland) · 2021
    Article
  15. Review
  16. Genes · 2020
    Review
  17. Tropical medicine and infectious disease · 2020
    Review
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 2 countries.

Katie R BradwellCenter for the Study of Biological Complexity, Virginia Commonwealth University, Richmond, VA, USA.
Vishal N KopardeCenter for the Study of Biological Complexity, Virginia Commonwealth University, Richmond, VA, USA.
Andrey V MatveyevCenter for the Study of Biological Complexity, Virginia Commonwealth University, Richmond, VA, USA.
Myrna G SerranoCenter for the Study of Biological Complexity, Virginia Commonwealth University, Richmond, VA, USA.
João M P AlvesDepartment of Parasitology, ICB, University of São Paulo, São Paulo, SP, Brazil.
Hardik ParikhCenter for the Study of Biological Complexity, Virginia Commonwealth University, Richmond, VA, USA.
Bernice HuangCenter for the Study of Biological Complexity, Virginia Commonwealth University, Richmond, VA, USA.
Vladimir LeeCenter for the Study of Biological Complexity, Virginia Commonwealth University, Richmond, VA, USA.
Oneida Espinosa-AlvarezDepartment of Parasitology, ICB, University of São Paulo, São Paulo, SP, Brazil.
Paola A OrtizDepartment of Parasitology, ICB, University of São Paulo, São Paulo, SP, Brazil.
André G Costa-MartinsDepartment of Parasitology, ICB, University of São Paulo, São Paulo, SP, Brazil.
Marta M G TeixeiraDepartment of Parasitology, ICB, University of São Paulo, São Paulo, SP, Brazil.
Gregory A BuckCenter for the Study of Biological Complexity, Virginia Commonwealth University, Richmond, VA, USA. gregory.buck@vcuhealth.org.
Virginia Commonwealth University · USUniversidade de São Paulo · BR

Funding

Fundação de Amparo à Pesquisa do Estado de São Paulo #2013/14622-3National Science Foundation DEB-#080056
6 · The paper itself

Abstract

backgroundTrypanosoma conorhini and Trypanosoma rangeli, like Trypanosoma cruzi, are kinetoplastid protist parasites of mammals displaying divergent hosts, geographic ranges and lifestyles. Largely nonpathogenic T. rangeli and T. conorhini represent clades that are phylogenetically closely related to the T. cruzi and T. cruzi-like taxa and provide insights into the evolution of pathogenicity in those parasites. T. rangeli, like T. cruzi is endemic in many Latin American countries, whereas T. conorhini is tropicopolitan. T. rangeli and T. conorhini are exclusively extracellular, while T. cruzi has an intracellular stage in the mammalian host.

resultsHere we provide the first comprehensive sequence analysis of T. rangeli AM80 and T. conorhini 025E, and provide a comparison of their genomes to those of T. cruzi G and T. cruzi CL, respectively members of T. cruzi lineages TcI and TcVI. We report de novo assembled genome sequences of the low-virulent T. cruzi G, T. rangeli AM80, and T. conorhini 025E ranging from ~ 21-25 Mbp, with ~ 10,000 to 13,000 genes, and for the highly virulent and hybrid T. cruzi CL we present a ~ 65 Mbp in-house assembled haplotyped genome with ~ 12,500 genes per haplotype. Single copy orthologs of the two T. cruzi strains exhibited ~ 97% amino acid identity, and ~ 78% identity to proteins of T. rangeli or T. conorhini. Proteins of the latter two organisms exhibited ~ 84% identity. T. cruzi CL exhibited the highest heterozygosity. T. rangeli and T. conorhini displayed greater metabolic capabilities for utilization of complex carbohydrates, and contained fewer retrotransposons and multigene family copies, i.e. trans-sialidases, mucins, DGF-1, and MASP, compared to T. cruzi.

conclusionsOur analyses of the T. rangeli and T. conorhini genomes closely reflected their phylogenetic proximity to the T. cruzi clade, and were largely consistent with their divergent life cycles. Our results provide a greater context for understanding the life cycles, host range expansion, immunity evasion, and pathogenesis of these trypanosomatids.

Indexed as

Genome, ProtozoanGenomicsComputational BiologyEnergy MetabolismGenotypeMolecular TypingMultigene FamilyPhylogenyPseudogenesTrypanosomaTrypanosoma cruziTrypanosoma rangeliVirulenceComparative genomicsGenome sequencingTrypanosomatids

Identifiers

PMID30355302
PMCPMC6201504
OpenAlexW2898411822

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.