Evidence map›Paper›PMID 30354342›Full record

ArticleCirculation. Genomic and precision medicine2018

Druggability of Coronary Artery Disease Risk Loci.

Vinicius Tragante, Daiane Hemerich, Mohammad Alshabeeb, Ingrid Brænne, Harri Lempiäinen, Riyaz S Patel, Hester M den Ruijter, Michael R Barnes, Jason H Moore, Heribert Schunkert and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Circulation. Genomic and precision medicine, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed, 1 pooled it
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 1 synthesis or guideline pooled it, 22 citations in OpenAlex.

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  10. Network medicine in Cardiovascular Research.Cardiovascular research · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 2 countries.

Vinicius TraganteDivision of Heart and Lungs, Department of Cardiology (V.T., D.H., F.W.A.).
Daiane HemerichDivision of Heart and Lungs, Department of Cardiology (V.T., D.H., F.W.A.).
Mohammad AlshabeebDevelopmental Medicine Department, King Abdullah International Medical Research Center, King Saud Bin Abdulaziz University for Health Sciences, King Abdulaziz Medical City, Ministry of National Guard Health Affairs, Riyadh, Kingdom of Saudi Arabia (M.A.).
Ingrid BrænneInstitute for Cardiogenetics, University of Lübeck, Germany (I.B., J.E.).
Harri LempiäinenGenedata AG, Basel, Switzerland (H.L.).
Riyaz S PatelInstitute of Cardiovascular Science, University College London, United Kingdom (R.P., F.W.A.). Bart's Heart Centre, St Bartholomew's Hospital, London, United Kingdom (R.P.).
Hester M den RuijterLaboratory of Experimental Cardiology (H.M.d.R.).
Michael R BarnesWilliam Harvey Research Institute, Centre for Translational Bioinformatics, Barts and The London School of Medicine and Dentistry, Charterhouse Square, United Kingdom (M.R.B.).
Jason H MooreInstitute for Biomedical Informatics, University of Pennsylvania, Philadelphia (J.H.M.).
Heribert SchunkertDeutsches Herzzentrum München, Technische Universität München, Germany (H.S.).
Jeanette ErdmannInstitute for Cardiogenetics, University of Lübeck, Germany (I.B., J.E.).
Folkert W AsselbergsDivision of Heart and Lungs, Department of Cardiology (V.T., D.H., F.W.A.).
Institute of Experimental Cardiology · RUNetherlands Heart Institute · NL

Funding

Bioinformatics Strategies for Genome-Wide Association StudiesR01LM010098 · NLM · UNIVERSITY OF PENNSYLVANIA · PI MOORE, JASON H., WILLIAMS, SCOTT MATTHEW · 2009 to 2023
$5.1M
PREVENTIVE CARDIOLOGY ACADEMIC AWARDK07HL001476 · NHLBI · UNIVERSITY OF CHICAGO · PI DASGUPTA, DIPANKAR S · 1985 to 1989
–
British Heart Foundation FS/14/76/30933Department of HealthNLM NIH HHS R01 LM010098
6 · The paper itself

Abstract

backgroundGenome-wide association studies have identified multiple loci associated with coronary artery disease and myocardial infarction, but only a few of these loci are current targets for on-market medications. To identify drugs suitable for repurposing and their targets, we created 2 unique pipelines integrating public data on 49 coronary artery disease/myocardial infarction-genome-wide association studies loci, drug-gene interactions, side effects, and chemical interactions.

methodsWe first used publicly available genome-wide association studies results on all phenotypes to predict relevant side effects, identified drug-gene interactions, and prioritized candidates for repurposing among existing drugs. Second, we prioritized gene product targets by calculating a druggability score to estimate how accessible pockets of coronary artery disease/myocardial infarction-associated gene products are, then used again the genome-wide association studies results to predict side effects, excluded loci with widespread cross-tissue expression to avoid housekeeping and genes involved in vital processes and accordingly ranked the remaining gene products.

resultsThese pipelines ultimately led to 3 suggestions for drug repurposing: pentolinium, adenosine triphosphate, and riociguat (to target CHRNB4, ACSS2, and GUCY1A3, respectively); and 3 proteins for drug development: LMOD1 (leiomodin 1), HIP1 (huntingtin-interacting protein 1), and PPP2R3A (protein phosphatase 2, regulatory subunit b-double prime, α). Most current therapies for coronary artery disease/myocardial infarction treatment were also rediscovered.

conclusionsIntegration of genomic and pharmacological data may prove beneficial for drug repurposing and development, as evidence from our pipelines suggests.

Indexed as

Cardiovascular AgentsGenetic LociAlgorithmsAnimalsCoronary Artery DiseaseDrug DiscoveryDrug Evaluation, PreclinicalDrug InteractionsDrug-Related Side Effects and Adverse ReactionsDrug RepositioningGene-Environment InteractionGenetic Predisposition to DiseaseGenome-Wide Association StudyHumansMolecular Docking SimulationMolecular Targeted TherapyCardiovascular Agentscoronary artery diseasedrug interactionsgenome-wide association studymyocardial infarctionpharmacogenetics

Identifiers

PMID30354342
PMCPMC6205215
OpenAlexW2888307661

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.