Evidence map›Paper›PMID 30353169›Full record

ArticleMolecular psychiatry2020

Genome-wide significant regions in 43 Utah high-risk families implicate multiple genes involved in risk for completed suicide.

Hilary Coon, Todd M Darlington, Emily DiBlasi, W Brandon Callor, Elliott Ferris, Alison Fraser, Zhe Yu, Nancy William, Sujan C Das, Sheila E Crowell and 15 more

Open access · hybridAbstract read
In one paragraph

Article in Molecular psychiatry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed, 3 pooled it
8.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 3 syntheses or guidelines pooled it, 66 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Genetics and epigenetics of self-injurious thoughts and behaviors: Systematic review of the suicide literature and methodological considerations.American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics · 2022
    Pooled it
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  11. Cytokine gene polymorphisms and suicide risk in an Indian ancestral population: A case-control study.The world journal of biological psychiatry : the official journal of the World Federation of Societies of Biological Psychiatry · 2024
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  18. Extended familial risk of suicide death is associated with younger age at death and elevated polygenic risk of suicide.American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics · 2022
    Article
  19. Article
  20. Genetics and Brain Transcriptomics of Completed Suicide.The American journal of psychiatry · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 4 institutions in 1 country.

Hilary CoonDepartment of Psychiatry, University of Utah School of Medicine, Salt Lake City, UT, USA. hilary.coon@hsc.utah.edu.ORCID http://orcid.org/0000-0002-8877-5446
Todd M DarlingtonDepartment of Psychiatry, University of Utah School of Medicine, Salt Lake City, UT, USA.
Emily DiBlasiDepartment of Psychiatry, University of Utah School of Medicine, Salt Lake City, UT, USA.
W Brandon CallorUtah State Office of the Medical Examiner, Utah Department of Health, Salt Lake City, UT, USA.
Elliott FerrisDepartment of Neurobiology & Anatomy, University of Utah School of Medicine, Salt Lake City, UT, USA.
Alison FraserPedigree & Population Resource, Huntsman Cancer Institute, University of Utah, Salt Lake City, UT, USA.
Zhe YuPedigree & Population Resource, Huntsman Cancer Institute, University of Utah, Salt Lake City, UT, USA.
Nancy WilliamDepartment of Psychiatry, University of Utah School of Medicine, Salt Lake City, UT, USA.
Sujan C DasDepartment of Psychiatry, University of Utah School of Medicine, Salt Lake City, UT, USA.
Sheila E CrowellDepartment of Psychology, University of Utah, Salt Lake City, UT, USA.
Danli ChenDepartment of Psychiatry, University of Utah School of Medicine, Salt Lake City, UT, USA.
John S AndersonDepartment of Psychiatry, University of Utah School of Medicine, Salt Lake City, UT, USA.
Michael KleinHealth Sciences Center Core Research Facility, University of Utah, Salt Lake City, UT, USA.
Leslie JerominskiDepartment of Psychiatry, University of Utah School of Medicine, Salt Lake City, UT, USA.
Dale CannonDepartment of Psychiatry, University of Utah School of Medicine, Salt Lake City, UT, USA.
Andrey ShabalinDepartment of Psychiatry, University of Utah School of Medicine, Salt Lake City, UT, USA.ORCID http://orcid.org/0000-0003-0309-6821
Anna DochertyDepartment of Psychiatry, University of Utah School of Medicine, Salt Lake City, UT, USA.
Megan WilliamsDepartment of Neurobiology & Anatomy, University of Utah School of Medicine, Salt Lake City, UT, USA.
Ken R SmithPedigree & Population Resource, Huntsman Cancer Institute, University of Utah, Salt Lake City, UT, USA.
Brooks KeeshinDepartment of Pediatrics, Intermountain Healthcare, Salt Lake City, UT, USA.
Amanda V BakianDepartment of Psychiatry, University of Utah School of Medicine, Salt Lake City, UT, USA.
Erik ChristensenUtah State Office of the Medical Examiner, Utah Department of Health, Salt Lake City, UT, USA.ORCID http://orcid.org/0000-0003-4961-9843
Qingqin S LiResearch Information Technology, Janssen Research & Development LLC, Pennington, NJ, USA.ORCID http://orcid.org/0000-0003-4182-4535
Nicola J CampDepartment of Internal Medicine, University of Utah School of Medicine, Salt Lake City, UT, USA.
Douglas GrayDepartment of Psychiatry, University of Utah School of Medicine, Salt Lake City, UT, USA.
University of Utah · USUtah Department of Health · USIntermountain Healthcare · USJanssen (United States) · US

Funding

Utah Center for Clinical and Translational ScienceUL1TR002538 · NCATS · UNIVERSITY OF UTAH · PI HESS, RACHEL, MAJERSIK, JENNIFER JUHL · 2018 to 2022
$26.0M
UNIVERSITY OF UTAH CENTER FOR CLINICAL AND TRANSLATIONAL SCIENCE-UL1: BPCAUL1RR025764 · NCRR · UNIVERSITY OF UTAH · PI MCCLAIN, DONALD A. · 2008 to 2011
$19.4M
Genetic analysis of high-risk Utah suicide pedigreesR01MH099134 · NIMH · UNIVERSITY OF UTAH · PI COON, HILARY · 2013 to 2017
$3.9M
Genome-Wide Association Analysis of Suicide DeathR01MH123619 · NIMH · UNIVERSITY OF UTAH · PI DOCHERTY, ANNA R. · 2020 to 2024
$3.2M
Modeling Dimensionality and Genetic Heterogeneity in SchizophreniaK01MH109765 · NIMH · VIRGINIA COMMONWEALTH UNIVERSITY · PI DOCHERTY, ANNA R. · 2016 to 2019
$675k
Integrating Genomic and Environmental Perspectives on Internalizing DisordersK01MH093731 · NIMH · VIRGINIA COMMONWEALTH UNIVERSITY · PI ADKINS, DANIEL E · 2011 to 2015
$649k
NCATS NIH HHS UL1 TR002538NCRR NIH HHS UL1 RR025764NIMH NIH HHS K01 MH093731NIMH NIH HHS K01 MH109765NIMH NIH HHS R01 MH099134NIMH NIH HHS R01 MH123619
6 · The paper itself

Abstract

Suicide is the 10th leading cause of death in the United States. Although environment has undeniable impact, evidence suggests that genetic factors play a significant role in completed suicide. We linked a resource of ~ 4500 DNA samples from completed suicides obtained from the Utah Medical Examiner to genealogical records and medical records data available on over eight million individuals. This linking has resulted in the identification of high-risk extended families (7-9 generations) with significant familial risk of completed suicide. Familial aggregation across distant relatives minimizes effects of shared environment, provides more genetically homogeneous risk groups, and magnifies genetic risks through familial repetition. We analyzed Illumina PsychArray genotypes from suicide cases in 43 high-risk families, identifying 30 distinct shared genomic segments with genome-wide evidence (p = 2.02E-07-1.30E-18) of segregation with completed suicide. The 207 genes implicated by the shared regions provide a focused set of genes for further study; 18 have been previously associated with suicide risk. Although PsychArray variants do not represent exhaustive variation within the 207 genes, we investigated these for specific segregation within the high-risk families, and for association of variants with predicted functional impact in ~ 1300 additional Utah suicides unrelated to the discovery families. None of the limited PsychArray variants explained the high-risk family segregation; sequencing of these regions will be needed to discover segregating risk variants, which may be rarer or regulatory. However, additional association tests yielded four significant PsychArray variants (SP110, rs181058279; AGBL2, rs76215382; SUCLA2, rs121908538; APH1B, rs745918508), raising the likelihood that these genes confer risk of completed suicide.

Indexed as

Genome-Wide Association StudySuicide, CompletedAdultFemaleGenetic Predisposition to DiseaseGenotypeHumansMaleUtah

Identifiers

PMID30353169
PMCPMC6478563
OpenAlexW2951551904

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.