Evidence map›Paper›PMID 30353013›Full record

ArticleNature communications2018

DAF-16/FOXO and HLH-30/TFEB function as combinatorial transcription factors to promote stress resistance and longevity.

Xin-Xuan Lin, Ilke Sen, Georges E Janssens, Xin Zhou, Bryan R Fonslow, Daniel Edgar, Nicholas Stroustrup, Peter Swoboda, John R Yates, Gary Ruvkun and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 114 papers.

0numbers the graph read from it
0cells of the map it votes in
114citing papers in PubMed
6.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

114 citing papers in PubMed, 172 citations in OpenAlex.

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  10. Genome-wide characterization of theFrontiers in plant science · 2026
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  16. DAF-16/FOXO maintains genome integrity following genotoxic stress.bioRxiv : the preprint server for biology · 2025
    Article
  17. Article
  18. Article
  19. Iron-deplete diet enhancesbioRxiv : the preprint server for biology · 2025
    Article
  20. Article

54 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 4 countries.

Xin-Xuan LinIntegrated Cardio Metabolic Centre (ICMC), Department of Medicine, Karolinska Institute, Blickagången 6, 14157, Huddinge, Sweden.
Ilke SenIntegrated Cardio Metabolic Centre (ICMC), Department of Medicine, Karolinska Institute, Blickagången 6, 14157, Huddinge, Sweden.
Georges E JanssensIntegrated Cardio Metabolic Centre (ICMC), Department of Medicine, Karolinska Institute, Blickagången 6, 14157, Huddinge, Sweden.
Xin ZhouIntegrated Cardio Metabolic Centre (ICMC), Department of Medicine, Karolinska Institute, Blickagången 6, 14157, Huddinge, Sweden.
Bryan R FonslowDepartment of Chemical Physiology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA, 92037, USA.
Daniel EdgarIntegrated Cardio Metabolic Centre (ICMC), Department of Medicine, Karolinska Institute, Blickagången 6, 14157, Huddinge, Sweden.
Nicholas StroustrupCentre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology, C/ Dr. Aiguader, 88, 08003, Barcelona, Spain.ORCID http://orcid.org/0000-0001-9530-7301
Peter SwobodaDepartment of Biosciences and Nutrition, Karolinska Institute, Blickagången 16, 14157, Huddinge, Sweden.ORCID http://orcid.org/0000-0001-6416-8572
John R YatesDepartment of Chemical Physiology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA, 92037, USA.ORCID http://orcid.org/0000-0001-5267-1672
Gary RuvkunDepartment of Molecular Biology, Massachusetts General Hospital, 185 Cambridge Street, Boston, MA, 02114, USA.
Christian G RiedelIntegrated Cardio Metabolic Centre (ICMC), Department of Medicine, Karolinska Institute, Blickagången 6, 14157, Huddinge, Sweden. christian.riedel@ki.se.ORCID http://orcid.org/0000-0002-3689-8022
Karolinska Institutet · SEUniversity of Groningen · NLHarvard University · USScripps Research Institute · US

Funding

TrainingP41GM103533 · NIGMS · UNIVERSITY OF WASHINGTON · PI MACCOSS, MICHAEL · 2012 to 2021
$20.7M
Inositol signaling in C. elegans Senescence and DiapauseR01AG043184 · NIA · MASSACHUSETTS GENERAL HOSPITAL · PI RUVKUN, GARY B · 2012 to 2021
$4.9M
NIA NIH HHS R01 AG043184NIGMS NIH HHS P41 GM103533
6 · The paper itself

Abstract

The ability to perceive and respond to harmful conditions is crucial for the survival of any organism. The transcription factor DAF-16/FOXO is central to these responses, relaying distress signals into the expression of stress resistance and longevity promoting genes. However, its sufficiency in fulfilling this complex task has remained unclear. Using C. elegans, we show that DAF-16 does not function alone but as part of a transcriptional regulatory module, together with the transcription factor HLH-30/TFEB. Under harmful conditions, both transcription factors translocate into the nucleus, where they often form a complex, co-occupy target promoters, and co-regulate many target genes. Interestingly though, their synergy is stimulus-dependent: They rely on each other, functioning in the same pathway, to promote longevity or resistance to oxidative stress, but they elicit heat stress responses independently, and they even oppose each other during dauer formation. We propose that this module of DAF-16 and HLH-30 acts by combinatorial gene regulation to relay distress signals into the expression of specific target gene sets, ensuring optimal survival under each given threat.

Indexed as

Stress, PhysiologicalAnimalsBasic Helix-Loop-Helix ProteinsCaenorhabditis elegansCaenorhabditis elegans ProteinsCell NucleusEpistasis, GeneticForkhead Transcription FactorsGene Expression Regulation, DevelopmentalLongevityModels, GeneticPromoter Regions, GeneticProtein BindingBasic Helix-Loop-Helix ProteinsCaenorhabditis elegans Proteinsdaf-16 protein, C elegansForkhead Transcription FactorsHLH-30 protein, C elegans

Identifiers

PMID30353013
PMCPMC6199276
OpenAlexW2896523219

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.