Evidence map›Paper›PMID 30353006›Full record

ArticleNature communications2018

Aberrant activation of non-coding RNA targets of transcriptional elongation complexes contributes to TDP-43 toxicity.

Chia-Yu Chung, Amit Berson, Jason R Kennerdell, Ashley Sartoris, Travis Unger, Sílvia Porta, Hyung-Jun Kim, Edwin R Smith, Ali Shilatifard, Vivianna Van Deerlin and 3 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 44 citations in OpenAlex.

  1. Review
  2. Article
  3. From development to disease: the neuronal role of hnRNPs through the lens ofFrontiers in cell and developmental biology · 2026
    Review
  4. Review
  5. Article
  6. TDP-43 impairs sleep inScience advances · 2024
    Article
  7. TDP-43 Epigenetic Facets and Their Neurodegenerative Implications.International journal of molecular sciences · 2023
    Review
  8. Review
  9. Article
  10. Article
  11. Review
  12. Emerging Therapies and Novel Targets for TDP-43 Proteinopathy in ALS/FTD.Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics · 2022
    Review
  13. Review
  14. Article
  15. Article
  16. Review
  17. Protein Aggregation in the Pathogenesis of Ischemic Stroke.Cellular and molecular neurobiology · 2021
    Review
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 2 countries.

Chia-Yu ChungDepartment of Biology, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Amit BersonDepartment of Biology, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Jason R KennerdellDepartment of Biology, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Ashley SartorisDepartment of Biology, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Travis UngerDepartment of Neurology, Perelman School of Medicine, Philadelphia, PA, 19104, USA.
Sílvia PortaDepartment of Pathology and Laboratory Medicine, Perelman School of Medicine, Philadelphia, PA, 19104, USA.
Hyung-Jun KimDepartment of Biology, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Edwin R SmithDepartment of Biochemistry and Molecular Genetics, Feinberg School of Medicine, Northwestern University, Chicago, IL, 60611, USA.
Ali ShilatifardDepartment of Biochemistry and Molecular Genetics, Feinberg School of Medicine, Northwestern University, Chicago, IL, 60611, USA.ORCID http://orcid.org/0000-0002-7490-2854
Vivianna Van DeerlinDepartment of Pathology and Laboratory Medicine, Perelman School of Medicine, Philadelphia, PA, 19104, USA.
Virginia M-Y LeeDepartment of Pathology and Laboratory Medicine, Perelman School of Medicine, Philadelphia, PA, 19104, USA.
Alice Chen-PlotkinCell and Molecular Biology Graduate Group, Perelman School of Medicine, Philadelphia, PA, 19104, USA.
Nancy M BoniniDepartment of Biology, University of Pennsylvania, Philadelphia, PA, 19104, USA. nbonini@sas.upenn.edu.ORCID http://orcid.org/0000-0003-0226-5291
University of Pennsylvania · USNorthwestern University · USKorea Brain Research Institute · KR

Funding

Transgenic Mouse Models of Tau PathologiesP01AG017586 · NIA · UNIVERSITY OF PENNSYLVANIA · PI LEE, VIRGINIA M · 2000 to 2021
$37.3M
Molecular Genetic Insight into Neurodegenerative Disease from DrosophilaR35NS097275 · NINDS · UNIVERSITY OF PENNSYLVANIA · PI BONINI, NANCY M · 2017 to 2024
$6.0M
TMEM106B in neurodegenerative diseaseR01NS082265 · NINDS · UNIVERSITY OF PENNSYLVANIA · PI CHEN-PLOTKIN, ALICE S · 2013 to 2024
$4.7M
Epigenetic Changes associated with Neurodegenerative DiseasesR01NS078283 · NINDS · UNIVERSITY OF PENNSYLVANIA · PI BERGER, SHELLEY L, BONINI, NANCY M · 2012 to 2016
$3.3M
Examining neuronal resilience in a mouse model of sporadic ALSR01NS110688 · NINDS · UNIVERSITY OF PENNSYLVANIA · PI LEE, VIRGINIA M · 2019 to 2023
$1.8M
SYNAPTOBREVIN AND NEUROTRANSMITTER RELEASEF32NS009727 · NINDS · STANFORD UNIVERSITY · PI DEITCHER, DAVID L · 1994 to 1996
–
Glenn Foundation for Medical Research Biological Mechanisms of AgingNIA NIH HHS P01 AG017586NINDS NIH HHS F32 NS009727NINDS NIH HHS R01 NS078283NINDS NIH HHS R01 NS082265NINDS NIH HHS R01 NS110688NINDS NIH HHS R35 NS097275U.S. Department of Health & Human Services | NIH | National Institute of Neurological Disorders and Stroke (NINDS) R01-NS078283U.S. Department of Health & Human Services | NIH | National Institute of Neurological Disorders and Stroke (NINDS) R35-NS09727U.S. Department of Health & Human Services | NIH | National Institute on Aging (U.S. National Institute on Aging) AG-017586
6 · The paper itself

Abstract

TDP-43 is the major disease protein associated with amyotrophic lateral sclerosis (ALS) and frontotemporal lobar degeneration with ubiquitinated inclusions (FTLD-TDP). Here we identify the transcriptional elongation factor Ell-a shared component of little elongation complex (LEC) and super elongation complex (SEC)-as a strong modifier of TDP-43-mediated neurodegeneration. Our data indicate select targets of LEC and SEC become upregulated in the fly ALS/FTLD-TDP model. Among them, U12 snRNA and a stress-induced long non-coding RNA Hsrω, functionally contribute to TDP-43-mediated degeneration. We extend the findings of Hsrω, which we identify as a chromosomal target of TDP-43, to show that the human orthologue Sat III is elevated in a human cellular disease model and FTLD-TDP patient tissue. We further demonstrate an interaction between TDP-43 and human ELL2 by co-immunoprecipitation from human cells. These findings reveal important roles of Ell-complexes LEC and SEC in TDP-43-associated toxicity, providing potential therapeutic insight for TDP-43-associated neurodegeneration.

Indexed as

Transcription Elongation, GeneticAnimalsDNA-Binding ProteinsDrosophila melanogasterDrosophila ProteinsFemaleGenetic LociHEK293 CellsHumansMaleModels, BiologicalNuclear ProteinsPolytene ChromosomesProtein BindingRNA, Small NuclearRNA, UntranslatedDNA-Binding ProteinsDrosophila ProteinsELL2 protein, humanlilli protein, DrosophilaNuclear ProteinsRNA, Small NuclearRNA, UntranslatedTranscriptional Elongation FactorsTranscription FactorsU12 small nuclear RNA

Identifiers

PMID30353006
PMCPMC6199344
OpenAlexW2897722778

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.