Evidence map›Paper›PMID 30352998›Full record

ArticleNature communications2018

Design of Peptoid-peptide Macrocycles to Inhibit the β-catenin TCF Interaction in Prostate Cancer.

Jeffrey A Schneider, Timothy W Craven, Amanda C Kasper, Chi Yun, Michael Haugbro, Erica M Briggs, Vladimir Svetlov, Evgeny Nudler, Holger Knaut, Richard Bonneau and 3 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 90 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Jeffrey A SchneiderDepartments of Urology, New York University School of Medicine, New York, NY, 10016, USA.
Timothy W CravenDepartment of Chemistry, New York University, New York, NY, 10003, USA.
Amanda C KasperDepartment of Chemistry, New York University, New York, NY, 10003, USA.
Chi YunSkirball Institute of Biomolecular Medicine, New York University School of Medicine, New York, NY, 10016, USA.
Michael HaugbroDepartment of Chemistry, New York University, New York, NY, 10003, USA.
Erica M BriggsDepartments of Urology, New York University School of Medicine, New York, NY, 10016, USA.
Vladimir SvetlovBiochemistry and Molecular Pharmacology, New York University School of Medicine, New York, NY, 10016, USA.
Evgeny NudlerBiochemistry and Molecular Pharmacology, New York University School of Medicine, New York, NY, 10016, USA.
Holger KnautSkirball Institute of Biomolecular Medicine, New York University School of Medicine, New York, NY, 10016, USA.
Richard BonneauDepartment of Biology, Center for Genomics and Systems Biology, New York University, New York, NY, 10003, USA.
Michael J GarabedianDepartments of Urology, New York University School of Medicine, New York, NY, 10016, USA.
Kent KirshenbaumDepartment of Chemistry, New York University, New York, NY, 10003, USA. kk54@nyu.edu.
Susan K LoganDepartments of Urology, New York University School of Medicine, New York, NY, 10016, USA. Susan.Logan@nyulangone.org.
New York University · USHoward Hughes Medical Institute · US

Funding

Vaccine FacilityP30CA016087 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ADRIANA HEGUY · 1985 to 2026
$83.1M
MEDICAL SCIENTIST TRAININGT32GM007308 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI PHILIPS, MARK REID · 1985 to 2019
$23.2M
TRAINING PROGRAM IN MOLECULAR ONCOLOGY &IMMUNOLOGYT32CA009161 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI CARROLL, WILLIAM L., LEVY, DAVID E · 1985 to 2020
$13.3M
Transcription repression in prostate cancerR01CA112226 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI LOGAN, SUSAN K. · 2008 to 2019
$4.2M
Transcription termination and gene regulation by Rho: Integrative analysisR01GM126891 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI NUDLER, EVGENY A · 2018 to 2021
$2.3M
Molecular Regulation of Trigeminal Sensory Ganglia DevelopmentR01NS069839 · NINDS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI KNAUT, HOLGER · 2011 to 2016
$2.2M
NCI NIH HHS P30 CA016087NCI NIH HHS R01 CA112226NCI NIH HHS T32 CA009161NIGMS NIH HHS R01 GM126891NIGMS NIH HHS T32 GM007308NINDS NIH HHS R01 NS069839
6 · The paper itself

Abstract

New chemical inhibitors of protein-protein interactions are needed to propel advances in molecular pharmacology. Peptoids are peptidomimetic oligomers with the capability to inhibit protein-protein interactions by mimicking protein secondary structure motifs. Here we report the in silico design of a macrocycle primarily composed of peptoid subunits that targets the β-catenin:TCF interaction. The β-catenin:TCF interaction plays a critical role in the Wnt signaling pathway which is over-activated in multiple cancers, including prostate cancer. Using the Rosetta suite of protein design algorithms, we evaluate how different macrocycle structures can bind a pocket on β-catenin that associates with TCF. The in silico designed macrocycles are screened in vitro using luciferase reporters to identify promising compounds. The most active macrocycle inhibits both Wnt and AR-signaling in prostate cancer cell lines, and markedly diminishes their proliferation. In vivo potential is demonstrated through a zebrafish model, in which Wnt signaling is potently inhibited.

Indexed as

Animalsbeta CateninCell Line, TumorCell ProliferationEmbryo, NonmammalianEyeHEK293 CellsHumansMacrocyclic CompoundsMalePeptidesPeptoidsPhenotypeProstatic NeoplasmsProtein BindingReceptors, Androgenbeta CateninMacrocyclic CompoundsPeptidesPeptoidsReceptors, AndrogenTCF Transcription Factors

Identifiers

PMID30352998
PMCPMC6199279
OpenAlexW2897937537

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.