Evidence map›Paper›PMID 30352365›Full record

ArticleMolecular immunology2018

Enhancer RNA and NFκB-dependent P300 regulation of ADAMDEC1.

Lihua Shi, Song Li, Kelly Maurer, Zhe Zhang, Michelle Petri, Kathleen E Sullivan

Open access · greenAbstract read
In one paragraph

Article in Molecular immunology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
0.6field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
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  9. Article
  10. Enhancer RNAs in transcriptional regulation: recent insights.Frontiers in cell and developmental biology · 2023
    Review
  11. Review
  12. Enhancer RNA (eRNA) in Human Diseases.International journal of molecular sciences · 2022
    Review
  13. Article
  14. Article
  15. Review
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Lihua ShiThe Division of Allergy Immunology at The Children's Hospital of Philadelphia, 3615 Civic Center Blvd, Philadelphia, PA, 19104, United states. Electronic address: ShiL@email.chop.edu.
Song LiThe Division of Allergy Immunology at The Children's Hospital of Philadelphia, 3615 Civic Center Blvd, Philadelphia, PA, 19104, United states. Electronic address: Song@email.chop.edu.
Kelly MaurerThe Division of Allergy Immunology at The Children's Hospital of Philadelphia, 3615 Civic Center Blvd, Philadelphia, PA, 19104, United states. Electronic address: Dietzmann@email.chop.edu.
Zhe ZhangThe Department of Biomedical and Health informatics at the Children's Hospital of Philadelphia, 3535 Market St, Philadelphia, PA, 19104, United states. Electronic address: Zhangz@email.chop.edu.
Michelle PetriDivision of Rheumatology, Johns Hopkins University School of Medicine, 1830 E. Monument Street, Baltimore, MD, 21205, United states. Electronic address: Mpetri@jhmi.edu.
Kathleen E SullivanThe Division of Allergy Immunology at The Children's Hospital of Philadelphia, 3615 Civic Center Blvd, Philadelphia, PA, 19104, United states. Electronic address: Sullivank@email.chop.edu.
Children's Hospital of Philadelphia · USJohns Hopkins University · US

Funding

Lupus CohortR01AR043727 · NIAMS · JOHNS HOPKINS UNIVERSITY · PI PETRI, MICHELLE A · 1997 to 2015
$8.2M
Hopkins Lupus CohortR01AR069572 · NIAMS · JOHNS HOPKINS UNIVERSITY · PI PETRI, MICHELLE A · 2016 to 2020
$3.4M
Epigenomics of SLER01AR058547 · NIAMS · CHILDREN'S HOSP OF PHILADELPHIA · PI SULLIVAN, KATHLEEN E · 2009 to 2013
$1.8M
NIAMS NIH HHS R01 AR043727NIAMS NIH HHS R01 AR058547NIAMS NIH HHS R01 AR069572
6 · The paper itself

Abstract

We observed increased expression of ADAMDEC1 RNA in monocytes from patients with systemic lupus erythematosus. The precise role of ADAMDEC1 is uncertain and uniquely among metalloproteinases it utilizes a zinc-coordinating aspartic acid residue which allows it to escape inhibition by tissue inhibitor of metalloprotease-3 (TIMP-3). A closely related gene encodes the protein ADAM28, which is not up-regulated in lupus. We leveraged the ability to look at both gene's promoters and enhancers simultaneously. ADAMDEC1 was up-regulated by LPS while ADAM28 was not upregulated in the short term. We identified MAP kinases and NFκB as critical cell pathways regulating the expression of ADAMDEC1. These same pathways were implicated in driving the expression of the ADAMDEC1 upstream enhancer RNAs. We demonstrated that binding of the enhancer RNAs produced from the upstream enhancer were critically important and that p300 bound to both the RNA from the enhancer and the DNA at the enhancer. P300 binding to the enhancer was dependent on NFκB. These data define the critical pathways regulating the expression of ADAMDEC1 and extend our knowledge of the roles of enhancer RNAs and mechanistically links p300 and enhancer RNAs.

Indexed as

ADAM ProteinsCells, CulturedE1A-Associated p300 ProteinGene Expression RegulationHumansLipopolysaccharidesLupus Erythematosus, SystemicNF-kappa BProtein BindingRNAADAM ProteinsdecysinE1A-Associated p300 ProteinEP300 protein, humanLipopolysaccharidesNF-kappa BRNAADAM28ComplementDecysinEpigeneticeRNALupusSLE

Identifiers

PMID30352365
PMCPMC6260809
OpenAlexW2897430108

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.