Evidence map›Paper›PMID 30352055›Full record

ArticlePloS one2018

The dimeric structure of wild-type human glycosyltransferase B4GalT1.

Deborah Harrus, Fawzi Khoder-Agha, Miika Peltoniemi, Antti Hassinen, Lloyd Ruddock, Sakari Kellokumpu, Tuomo Glumoff

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
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  5. Journal of microbiology and biotechnology · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Deborah HarrusFaculty of Biochemistry and Molecular Medicine, University of Oulu, Aapistie 7A, Oulu, Finland.
Fawzi Khoder-AghaFaculty of Biochemistry and Molecular Medicine, University of Oulu, Aapistie 7A, Oulu, Finland.ORCID 0000-0003-0784-4997
Miika PeltoniemiFaculty of Biochemistry and Molecular Medicine, University of Oulu, Aapistie 7A, Oulu, Finland.
Antti HassinenFaculty of Biochemistry and Molecular Medicine, University of Oulu, Aapistie 7A, Oulu, Finland.
Lloyd RuddockFaculty of Biochemistry and Molecular Medicine, University of Oulu, Aapistie 7A, Oulu, Finland.
Sakari KellokumpuFaculty of Biochemistry and Molecular Medicine, University of Oulu, Aapistie 7A, Oulu, Finland.
Tuomo GlumoffFaculty of Biochemistry and Molecular Medicine, University of Oulu, Aapistie 7A, Oulu, Finland.ORCID 0000-0002-0476-509X
University of Oulu · FI

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Most glycosyltransferases, including B4GalT1 (EC 2.4.1.38), are known to assemble into enzyme homomers and functionally relevant heteromers in vivo. However, it remains unclear why and how these enzymes interact at the molecular/atomic level. Here, we solved the crystal structure of the wild-type human B4GalT1 homodimer. We also show that B4GalT1 exists in a dynamic equilibrium between monomer and dimer, since a purified monomer reappears as a mixture of both and as we obtained crystal forms of the monomer and dimer assemblies in the same crystallization conditions. These two crystal forms revealed the unliganded B4GalT1 in both the open and the closed conformation of the Trp loop and the lid regions, responsible for donor and acceptor substrate binding, respectively. The present structures also show the lid region in full in an open conformation, as well as a new conformation for the GlcNAc acceptor loop (residues 272-288). The physiological relevance of the homodimer in the crystal was validated by targeted mutagenesis studies coupled with FRET assays. These showed that changing key catalytic amino acids impaired homomer formation in vivo. The wild-type human B4GalT1 structure also explains why the variant proteins used for crystallization in earlier studies failed to reveal the homodimers described in this study.

Indexed as

AnimalsChlorocebus aethiopsCOS CellsEscherichia coliGalactosyltransferasesHumansModels, MolecularMutationProtein ConformationProtein DomainsProtein Multimerizationbeta-1,4-galactosyltransferase IGalactosyltransferases

Identifiers

PMID30352055
PMCPMC6198961
OpenAlexW2897845851

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.