Evidence map›Paper›PMID 30349868›Full record

ArticleIEEE transactions on computational social systems2018

Extreme-scale Dynamic Exploration of a Distributed Agent-based Model with the EMEWS Framework.

Jonathan Ozik, Nicholson T Collier, Justin M Wozniak, Charles Macal, Gary An

Abstract read
In one paragraph

Article in IEEE transactions on computational social systems, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. DISTRIBUTED MODEL EXPLORATION WITH EMEWS.Proceedings of the ... Winter Simulation Conference. Winter Simulation Conference · 2024
    Article
  6. DISTRIBUTED AGENT-BASED SIMULATION WITH REPAST4PY.Proceedings of the ... Winter Simulation Conference. Winter Simulation Conference · 2022
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Experiences in Developing a Distributed Agent-based Modeling Toolkit with Python.Proceedings of PYHPC 2020 : 9th Workshop on Python for High-Performance and Scientific Computing. Workshop on Python for High-Performance and Scientific Computing (9th : 2020 : Online) · 2020
    Article
  15. Learning-accelerated discovery of immune-tumour interactions.Molecular systems design & engineering · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Jonathan OzikArgonne National Laboratory and The University of Chicago.
Nicholson T CollierArgonne National Laboratory and The University of Chicago.
Justin M WozniakArgonne National Laboratory and The University of Chicago.
Charles MacalArgonne National Laboratory and The University of Chicago.
Gary AnThe University of Chicago.

Funding

Family Dynamics, Fertility, and Investments in Children Across Generations - Administrative SupplementR01HD069609 · NICHD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Thomas Fraser Crossley · 2011 to 2026
$14.2M
Computational discovery of effective hepatitis C intervention strategiesR01GM121600 · NIGMS · LOYOLA UNIVERSITY CHICAGO · PI BOODRAM, BASMATTEE, DAHARI, HAREL · 2017 to 2021
$2.0M
Adaptive Simulation to Enable Anatomic-scale Agent-basedR01GM115839 · NIGMS · UNIVERSITY OF CHICAGO · PI AN, GARY, MACAL, CHARLES MARTIN · 2015 to 2017
$1.2M
NICHD NIH HHS R01 HD069609NIGMS NIH HHS R01 GM115839NIGMS NIH HHS R01 GM121600
6 · The paper itself

Abstract

Agent-based models (ABMs) integrate multiple scales of behavior and data to produce higher-order dynamic phenomena and are increasingly used in the study of important social complex systems in biomedicine, socio-economics and ecology/resource management. However, the development, validation and use of ABMs is hampered by the need to execute very large numbers of simulations in order to identify their behavioral properties, a challenge accentuated by the computational cost of running realistic, large-scale, potentially distributed ABM simulations. In this paper we describe the Extreme-scale Model Exploration with Swift (EMEWS) framework, which is capable of efficiently composing and executing large ensembles of simulations and other "black box" scientific applications while integrating model exploration (ME) algorithms developed with the use of widely available 3rd-party libraries written in popular languages such as R and Python. EMEWS combines novel stateful tasks with traditional run-to-completion many task computing (MTC) and solves many problems relevant to high-performance workflows, including scaling to very large numbers (millions) of tasks, maintaining state and locality information, and enabling effective multiple-language problem solving. We present the high-level programming model of the EMEWS framework and demonstrate how it is used to integrate an active learning ME algorithm to dynamically and efficiently characterize the parameter space of a large and complex, distributed Message Passing Interface (MPI) agent-based infectious disease model.

Indexed as

Agent-based modelinghigh performance computingmachine learningmetamodelingparallel processing

Identifiers

PMID30349868
PMCPMC6195352

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.