Evidence map›Paper›PMID 30349086›Full record

ArticleNature medicine2018

A biobank of patient-derived pediatric brain tumor models.

Sebastian Brabetz, Sarah E S Leary, Susanne N Gröbner, Madison W Nakamoto, Huriye Şeker-Cin, Emily J Girard, Bonnie Cole, Andrew D Strand, Karina L Bloom, Volker Hovestadt and 17 more

Abstract read
PubMed Publisher
In one paragraph

Article in Nature medicine, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 127 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
127citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

127 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Prognostic implications of immune-related eight-gene signature in pediatric brain tumors.Brazilian journal of medical and biological research = Revista brasileira de pesquisas medicas e biologica · 2021
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  17. Modeling pediatric brain tumors with human stem cells.Frontiers in cellular neuroscience · 2026
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67 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors.

Sebastian BrabetzHopp Children's Cancer Center, NCT Heidelberg (KiTZ), Heidelberg, Germany.
Sarah E S LearySeattle Children's and University of Washington, Seattle, WA, USA.
Susanne N GröbnerHopp Children's Cancer Center, NCT Heidelberg (KiTZ), Heidelberg, Germany.
Madison W NakamotoClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.
Huriye Şeker-CinDivision of Pediatric Neurooncology, German Cancer Consortium (DKTK), German Cancer Research Center (DKFZ), Heidelberg, Germany.
Emily J GirardClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.
Bonnie ColeSeattle Children's and University of Washington, Seattle, WA, USA.
Andrew D StrandClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.
Karina L BloomClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.
Volker HovestadtDivision of Molecular Genetics, German Cancer Consortium (DKTK), German Cancer Research Center (DKFZ), Heidelberg, Germany.
Norman L MackHopp Children's Cancer Center, NCT Heidelberg (KiTZ), Heidelberg, Germany.
Fiona PakiamClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.
Benjamin SchwalmHopp Children's Cancer Center, NCT Heidelberg (KiTZ), Heidelberg, Germany.
Andrey KorshunovCCU Neuropathology, German Cancer Research Center (DKFZ), Heidelberg, Germany.
Gnana Prakash BalasubramanianHopp Children's Cancer Center, NCT Heidelberg (KiTZ), Heidelberg, Germany.
Paul A NorthcottDivision of Pediatric Neurooncology, German Cancer Consortium (DKTK), German Cancer Research Center (DKFZ), Heidelberg, Germany.
Kyle D PedroClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.ORCID http://orcid.org/0000-0001-6799-671X
Joyoti DeyClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.
Stacey HansenClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.
Sally DitzlerClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.
Peter LichterDivision of Molecular Genetics, German Cancer Consortium (DKTK), German Cancer Research Center (DKFZ), Heidelberg, Germany.
Lukas ChavezHopp Children's Cancer Center, NCT Heidelberg (KiTZ), Heidelberg, Germany.ORCID http://orcid.org/0000-0002-8718-8848
David T W JonesHopp Children's Cancer Center, NCT Heidelberg (KiTZ), Heidelberg, Germany.
Jan KosterDepartment of Oncogenomics, Academic Medical Center, Amsterdam, The Netherlands.
Stefan M PfisterHopp Children's Cancer Center, NCT Heidelberg (KiTZ), Heidelberg, Germany. s.pfister@kitz-heidelberg.de.
Marcel KoolHopp Children's Cancer Center, NCT Heidelberg (KiTZ), Heidelberg, Germany. m.kool@kitz-heidelberg.de.
James M OlsonSeattle Children's and University of Washington, Seattle, WA, USA. jolson@fredhutch.org.

Funding

Testing a cancer patient-specific SARS-CoV-2 vaccine in chemotherapy- and radiation-treated pediatric brain tumor mouse modelsR01CA114567 · NCI · SEATTLE CHILDREN'S HOSPITAL · PI OLSON, JAMES M · 2006 to 2023
$4.9M
NIH HHS 1R01CA155360NIH HHS 1U10CA180886-01NIH HHS R01 CA114567
6 · The paper itself

Abstract

Brain tumors are the leading cause of cancer-related death in children. Genomic studies have provided insights into molecular subgroups and oncogenic drivers of pediatric brain tumors that may lead to novel therapeutic strategies. To evaluate new treatments, better preclinical models adequately reflecting the biological heterogeneity are needed. Through the Children's Oncology Group ACNS02B3 study, we have generated and comprehensively characterized 30 patient-derived orthotopic xenograft models and seven cell lines representing 14 molecular subgroups of pediatric brain tumors. Patient-derived orthotopic xenograft models were found to be representative of the human tumors they were derived from in terms of histology, immunohistochemistry, gene expression, DNA methylation, copy number, and mutational profiles. In vivo drug sensitivity of targeted therapeutics was associated with distinct molecular tumor subgroups and specific genetic alterations. These models and their molecular characterization provide an unprecedented resource for the cancer community to study key oncogenic drivers and to evaluate novel treatment strategies.

Indexed as

Biological Specimen BanksImmunohistochemistryAnimalsBrain NeoplasmsCell Line, TumorChildChild, PreschoolDNA MethylationFemaleGenomicsHumansMaleMiceMutationPediatricsXenograft Model Antitumor Assays

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.