Evidence map›Paper›PMID 30349081›Full record

ArticleNature microbiology2018

Cryo-EM structure of the bacteria-killing type IV secretion system core complex from Xanthomonas citri.

Germán G Sgro, Tiago R D Costa, William Cenens, Diorge P Souza, Alexandre Cassago, Luciana Coutinho de Oliveira, Roberto K Salinas, Rodrigo V Portugal, Chuck S Farah, Gabriel Waksman

Abstract read
In one paragraph

Article in Nature microbiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed.

  1. Article
  2. Article
  3. Type IV Secretion System Drives Lipid Mixing.bioRxiv : the preprint server for biology · 2026
    Article
  4. Article
  5. In situ structures of theProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Subdomains of theLife science alliance · 2024
    Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Role of the CagY antenna projection inInfection and immunity · 2023
    Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Germán G SgroDepartamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, Brazil.ORCID http://orcid.org/0000-0002-2831-7945
Tiago R D CostaInstitute of Structural and Molecular Biology at UCL and Birkbeck College, Department of Biological Sciences, Birkbeck College, London, UK.ORCID http://orcid.org/0000-0003-2716-9669
William CenensDepartamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, Brazil.
Diorge P SouzaDepartamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, Brazil.
Alexandre CassagoLaboratório Nacional de Nanotecnologia (LNNano), Centro Nacional de Pesquisa em Energia e Materiais (CNPEM), Campinas, Brazil.
Luciana Coutinho de OliveiraDepartamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, Brazil.
Roberto K SalinasDepartamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, Brazil.
Rodrigo V PortugalLaboratório Nacional de Nanotecnologia (LNNano), Centro Nacional de Pesquisa em Energia e Materiais (CNPEM), Campinas, Brazil.
Chuck S FarahDepartamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, Brazil. chsfarah@iq.usp.br.ORCID http://orcid.org/0000-0003-3110-6302
Gabriel WaksmanInstitute of Structural and Molecular Biology at UCL and Birkbeck College, Department of Biological Sciences, Birkbeck College, London, UK. g.waksman@mail.cryst.bbk.ac.uk.

Funding

Wellcome Trust 098302
6 · The paper itself

Abstract

Type IV secretion (T4S) systems form the most common and versatile class of secretion systems in bacteria, capable of injecting both proteins and DNAs into host cells. T4S systems are typically composed of 12 components that form 2 major assemblies: the inner membrane complex embedded in the inner membrane and the core complex embedded in both the inner and outer membranes. Here we present the 3.3 Å-resolution cryo-electron microscopy model of the T4S system core complex from Xanthomonas citri, a phytopathogen that utilizes this system to kill bacterial competitors. An extensive mutational investigation was performed to probe the vast network of protein-protein interactions in this 1.13-MDa assembly. This structure expands our knowledge of the molecular details of T4S system organization, assembly and evolution.

Indexed as

BacteriaBacterial Outer Membrane ProteinsBacterial ProteinsCloning, MolecularCryoelectron MicroscopyGene Expression Regulation, BacterialModels, MolecularMultiprotein ComplexesMutationProtein BindingProtein ConformationProtein Conformation, alpha-HelicalProtein Interaction Domains and MotifsType IV Secretion SystemsXanthomonasBacterial Outer Membrane ProteinsBacterial ProteinsMultiprotein ComplexesType IV Secretion Systems

Identifiers

PMID30349081
PMCPMC6264810

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.