Evidence map›Paper›PMID 30349048›Full record

ArticleNature protocols2018

Live imaging of stem cells in the germarium of the Drosophila ovary using a reusable gas-permeable imaging chamber.

Amy Reilein, Elisa Cimetta, Nina M Tandon, Daniel Kalderon, Gordana Vunjak-Novakovic

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Nature protocols, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.8field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
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  5. Live imaging of theSTAR protocols · 2021
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  6. Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Amy ReileinDepartment of Biological Sciences, Columbia University, New York, NY, USA. areilein@gmail.com.
Elisa CimettaDepartment of Industrial Engineering (DII), Padova University, Padua, Italy. elisa.cimetta@unipd.it.
Nina M TandonEpiBone, Inc., Brooklyn, NY, USA.
Daniel KalderonDepartment of Biological Sciences, Columbia University, New York, NY, USA.
Gordana Vunjak-NovakovicDepartment of Biomedical Engineering, Columbia University, New York, NY, USA.ORCID http://orcid.org/0000-0002-9382-1574
Columbia University · USEpiBone (United States) · USUniversity of Padua · IT

Funding

Translational Bioreactors - Engineering Complex TissuesP41EB002520 · NIBIB · TUFTS UNIVERSITY MEDFORD · PI KAPLAN, DAVID L. · 2004 to 2018
$16.7M
Somatic stem cells in the Drosophila ovaryR01GM079351 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI DANIEL D KALDERON · 2009 to 2026
$5.8M
NIBIB NIH HHS P41 EB002520NIGMS NIH HHS R01 GM079351
6 · The paper itself

Abstract

Live imaging of stem cells and their support cells can be used to visualize cellular dynamics and fluctuations of intracellular signals, proteins, and organelles in order to better understand stem cell behavior in the niche. We describe a simple protocol for imaging stem cells in the Drosophila ovary that improves on alternative protocols in that flies of any age can be used, dissection is simplified because the epithelial sheath that surrounds each ovariole need not be removed, and ovarioles are imaged in a closed chamber with a large volume of medium that buffers oxygen, pH, and temperature. We also describe how to construct the imaging chamber, which can be easily modified and used to image other tissues and non-adherent cells. Imaging is limited by follicle cells moving out of the germarium in culture around the time of egg chamber budding; however, the epithelial sheath delays this abnormal cell migration. This protocol requires an hour to prepare the ovarioles, followed by half an hour on the confocal microscope to locate germaria and set z limits. Successful imaging time depends on germarial morphology at the time of dissection, but we suggest 10-11 h to encompass all specimens.

Indexed as

Equipment DesignAnimalsCell DivisionCell MovementCell TrackingCollagenCulture MediaDrosophila melanogasterDrug CombinationsFemaleGenes, ReporterGreen Fluorescent ProteinsLamininOocytesOogenesisOvaryCollagenCulture MediaDrug CombinationsGreen Fluorescent ProteinsLamininmatrigelProteoglycansSilicon

Identifiers

PMID30349048
PMCPMC6314018
OpenAlexW2897379042

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.