Evidence map›Paper›PMID 30349024›Full record

ArticleScientific reports2018

Diversity of macaque microbiota compared to the human counterparts.

Zigui Chen, Yun Kit Yeoh, Mamie Hui, Po Yee Wong, Martin C W Chan, Margaret Ip, Jun Yu, Robert D Burk, Francis K L Chan, Paul K S Chan

Open access · goldAbstract readComparative Study
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed, 1 pooled it
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 1 synthesis or guideline pooled it, 61 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. IgA and the gut-vagina axis.Frontiers in immunology · 2025
    Article
  11. Review
  12. Article
  13. Article
  14. Nonhuman primate models of pediatric viral diseases.Frontiers in cellular and infection microbiology · 2024
    Review
  15. Article
  16. Review
  17. Review
  18. Article
  19. Review
  20. The Cynomolgus Macaque Intestinal Mycobiome Is Dominated by theJournal of fungi (Basel, Switzerland) · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 3 countries.

Zigui ChenDepartment of Microbiology, Faculty of Medicine, The Chinese University of Hong Kong, Hong Kong, China.
Yun Kit YeohDepartment of Microbiology, Faculty of Medicine, The Chinese University of Hong Kong, Hong Kong, China.
Mamie HuiDepartment of Microbiology, Faculty of Medicine, The Chinese University of Hong Kong, Hong Kong, China.
Po Yee WongDepartment of Microbiology, Faculty of Medicine, The Chinese University of Hong Kong, Hong Kong, China.
Martin C W ChanDepartment of Microbiology, Faculty of Medicine, The Chinese University of Hong Kong, Hong Kong, China.
Margaret IpDepartment of Microbiology, Faculty of Medicine, The Chinese University of Hong Kong, Hong Kong, China.
Jun YuCentre for Gut Microbiota Research, The Chinese University of Hong Kong, Hong Kong, China.
Robert D BurkDepartments of Pediatrics, Microbiology and Immunology, Epidemiology and Population Health, and Obstetrics, Gynecology and Woman's Health, Albert Einstein College of Medicine, Bronx, NY, USA.ORCID http://orcid.org/0000-0002-8376-8458
Francis K L ChanCentre for Gut Microbiota Research, The Chinese University of Hong Kong, Hong Kong, China.
Paul K S ChanDepartment of Microbiology, Faculty of Medicine, The Chinese University of Hong Kong, Hong Kong, China. paulkschan@cuhk.edu.hk.ORCID http://orcid.org/0000-0002-6360-4608
Chinese University of Hong Kong · HKAlbert Einstein College of Medicine · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Studies on the microbial communities in non-human primate hosts provide unique insights in both evolution and function of microbes related to human health and diseases. Using 16S rRNA gene amplicon profiling, we examined the oral, anal and vaginal microbiota in a group of non-captive rhesus macaques (N = 116) and compared the compositions with the healthy communities from Human Microbiome Project. The macaque microbiota was dominated by Bacteroidetes, Firmicutes and Proteobacteria; however, there were marked differences in phylotypes enriched across body sites indicative of strong niche specialization. Compared to human gut microbiota where Bacteroides predominately enriched, the surveyed macaque anal community exhibited increased abundance of Prevotella. In contrast to the conserved human vaginal microbiota extremely dominated by Lactobacillus, the macaque vaginal microbial composition was highly diverse while lactobacilli were rare. A constant decrease of the vaginal microbiota diversity was observed among macaque samples from juvenile, adult without tubectomy, and adult with tubectomy, with the most notable distinction being the enrichment of Halomonas in juvenile and Saccharofermentans in contracepted adults. Both macaque and human oral microbiota were colonized with three most common oral bacterial genera: Streptococcus, Haemophilus and Veillonella, and shared relatively conserved communities to each other. A number of bacteria related to human pathogens were consistently detected in macaques. The findings delineate the range of structure and diversity of microbial communities in a wild macaque population, and enable the application of macaque as an animal model for future characterization of microbes in transmission, genomics and function.

Indexed as

MicrobiotaAnal CanalAnimalsCluster AnalysisDNA, BacterialDNA, RibosomalFemaleHealthy VolunteersHumansMacaca mulattaMouthPhylogenyRNA, Ribosomal, 16SSequence Analysis, DNAVaginaDNA, BacterialDNA, RibosomalRNA, Ribosomal, 16S

Identifiers

PMID30349024
PMCPMC6197227
OpenAlexW2897159065

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.