Evidence map›Paper›PMID 30348985›Full record

ArticleNature communications2018

Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations.

Sonya A MacParland, Jeff C Liu, Xue-Zhong Ma, Brendan T Innes, Agata M Bartczak, Blair K Gage, Justin Manuel, Nicholas Khuu, Juan Echeverri, Ivan Linares and 23 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 979 papers.

0numbers the graph read from it
0cells of the map it votes in
979citing papers in PubMed
50.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

979 citing papers in PubMed, 1,574 citations in OpenAlex.

  1. Article
  2. Identification of Prognostic Factors and Regulatory Pathways in Porto-Sinusoidal Vascular Disorder.Liver international : official journal of the International Association for the Study of the Liver · 2026
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919 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

33 authors at 3 institutions in 1 country.

Sonya A MacParlandMulti-Organ Transplant Program, Toronto General Hospital Research Institute, Toronto, ON, M5G 2C4, Canada. s.macparland@utoronto.ca.
Jeff C LiuThe Donnelly Centre, University of Toronto, Toronto, ON, M5S 3E1, Canada.
Xue-Zhong MaMulti-Organ Transplant Program, Toronto General Hospital Research Institute, Toronto, ON, M5G 2C4, Canada.
Brendan T InnesThe Donnelly Centre, University of Toronto, Toronto, ON, M5S 3E1, Canada.ORCID http://orcid.org/0000-0003-2496-3154
Agata M BartczakMulti-Organ Transplant Program, Toronto General Hospital Research Institute, Toronto, ON, M5G 2C4, Canada.
Blair K GageMcEwen Centre for Regenerative Medicine, University Health Network, Toronto, ON, M5G 1L7, Canada.
Justin ManuelMulti-Organ Transplant Program, Toronto General Hospital Research Institute, Toronto, ON, M5G 2C4, Canada.
Nicholas KhuuPrincess Margaret Genomics Centre, University Health Network, Toronto, ON, M5G 1L7, Canada.
Juan EcheverriMulti-Organ Transplant Program, Toronto General Hospital Research Institute, Toronto, ON, M5G 2C4, Canada.
Ivan LinaresMulti-Organ Transplant Program, Toronto General Hospital Research Institute, Toronto, ON, M5G 2C4, Canada.
Rahul GuptaMulti-Organ Transplant Program, Toronto General Hospital Research Institute, Toronto, ON, M5G 2C4, Canada.
Michael L ChengDepartment of Laboratory Medicine and Pathobiology, University of Toronto, Toronto, M5G 1L7, Canada.ORCID http://orcid.org/0000-0002-7841-3740
Lewis Y LiuDepartment of Immunology, University of Toronto, Toronto, ON, M5S 1A8, Canada.
Damra CamatMulti-Organ Transplant Program, Toronto General Hospital Research Institute, Toronto, ON, M5G 2C4, Canada.
Sai W ChungDepartment of Immunology, University of Toronto, Toronto, ON, M5S 1A8, Canada.
Rebecca K SeligaMulti-Organ Transplant Program, Toronto General Hospital Research Institute, Toronto, ON, M5G 2C4, Canada.
Zigong ShaoMulti-Organ Transplant Program, Toronto General Hospital Research Institute, Toronto, ON, M5G 2C4, Canada.
Elizabeth LeeMulti-Organ Transplant Program, Toronto General Hospital Research Institute, Toronto, ON, M5G 2C4, Canada.
Shinichiro OgawaMcEwen Centre for Regenerative Medicine, University Health Network, Toronto, ON, M5G 1L7, Canada.
Mina OgawaMcEwen Centre for Regenerative Medicine, University Health Network, Toronto, ON, M5G 1L7, Canada.ORCID http://orcid.org/0000-0002-9138-4913
Michael D WilsonDepartment of Molecular Genetics, University of Toronto, Toronto, M5G 1A8, Canada.ORCID http://orcid.org/0000-0002-4015-3066
Jason E FishDepartment of Laboratory Medicine and Pathobiology, University of Toronto, Toronto, M5G 1L7, Canada.
Markus SelznerMulti-Organ Transplant Program, Toronto General Hospital Research Institute, Toronto, ON, M5G 2C4, Canada.
Anand GhanekarMulti-Organ Transplant Program, Toronto General Hospital Research Institute, Toronto, ON, M5G 2C4, Canada.
David GrantMulti-Organ Transplant Program, Toronto General Hospital Research Institute, Toronto, ON, M5G 2C4, Canada.ORCID http://orcid.org/0000-0003-4468-8276
Paul GreigMulti-Organ Transplant Program, Toronto General Hospital Research Institute, Toronto, ON, M5G 2C4, Canada.
Gonzalo SapisochinMulti-Organ Transplant Program, Toronto General Hospital Research Institute, Toronto, ON, M5G 2C4, Canada.
Nazia SelznerMulti-Organ Transplant Program, Toronto General Hospital Research Institute, Toronto, ON, M5G 2C4, Canada.
Neil WinegardenPrincess Margaret Genomics Centre, University Health Network, Toronto, ON, M5G 1L7, Canada.ORCID http://orcid.org/0000-0001-5964-5899
Oyedele AdeyiMulti-Organ Transplant Program, Toronto General Hospital Research Institute, Toronto, ON, M5G 2C4, Canada.
Gordon KellerMcEwen Centre for Regenerative Medicine, University Health Network, Toronto, ON, M5G 1L7, Canada.
Gary D BaderThe Donnelly Centre, University of Toronto, Toronto, ON, M5S 3E1, Canada. gary.bader@utoronto.ca.ORCID http://orcid.org/0000-0003-0185-8861
Ian D McGilvrayMulti-Organ Transplant Program, Toronto General Hospital Research Institute, Toronto, ON, M5G 2C4, Canada. Ian.McGilvray@uhn.ca.
Toronto General Hospital · CAUniversity of Toronto · CAUniversity Health Network · CA

Funding

TR&D 3 - Network Guided Machine LearningP41GM103504 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI IDEKER, TREY · 2012 to 2024
$17.3M
NIGMS NIH HHS P41 GM103504
6 · The paper itself

Abstract

The liver is the largest solid organ in the body and is critical for metabolic and immune functions. However, little is known about the cells that make up the human liver and its immune microenvironment. Here we report a map of the cellular landscape of the human liver using single-cell RNA sequencing. We provide the transcriptional profiles of 8444 parenchymal and non-parenchymal cells obtained from the fractionation of fresh hepatic tissue from five human livers. Using gene expression patterns, flow cytometry, and immunohistochemical examinations, we identify 20 discrete cell populations of hepatocytes, endothelial cells, cholangiocytes, hepatic stellate cells, B cells, conventional and non-conventional T cells, NK-like cells, and distinct intrahepatic monocyte/macrophage populations. Together, our study presents a comprehensive view of the human liver at single-cell resolution that outlines the characteristics of resident cells in the liver, and in particular provides a map of the human hepatic immune microenvironment.

Indexed as

B-LymphocytesEndothelial CellsHepatic Stellate CellsHepatocytesHumansLiverMacrophagesMonocytesSequence Analysis, RNA

Identifiers

PMID30348985
PMCPMC6197289
OpenAlexW2896518632

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.