Evidence map›Paper›PMID 30348898›Full record

ArticleThe Journal of biological chemistry2018

Biochemical and structural studies reveal differences and commonalities among cap-snatching endonucleases from segmented negative-strand RNA viruses.

Tobias Holm, Janine-Denise Kopicki, Carola Busch, Silke Olschewski, Maria Rosenthal, Charlotte Uetrecht, Stephan Günther, Sophia Reindl

Open access · hybridAbstract readComparative Study
In one paragraph

Article in The Journal of biological chemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 45 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Pharmacophores of Influenza Virus PA Endonuclease Inhibitors.Advances in experimental medicine and biology · 2026
    Review
  8. Article
  9. Article
  10. Article
  11. ICTV Virus Taxonomy Profile:The Journal of general virology · 2024
    Article
  12. Crimean-Congo haemorrhagic fever virus.Nature reviews. Microbiology · 2023
    Review
  13. Article
  14. Review
  15. Identification of cap-dependent endonuclease inhibitors with broad-spectrum activity against bunyaviruses.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Tobias HolmFrom the Department of Virology, Bernhard-Nocht-Institute for Tropical Medicine, 20359 Hamburg, Germany.
Janine-Denise Kopickithe Heinrich Pette Institute, Leibniz Institute for Experimental Virology, 20251 Hamburg, Germany, and.
Carola BuschFrom the Department of Virology, Bernhard-Nocht-Institute for Tropical Medicine, 20359 Hamburg, Germany.
Silke OlschewskiFrom the Department of Virology, Bernhard-Nocht-Institute for Tropical Medicine, 20359 Hamburg, Germany.
Maria RosenthalFrom the Department of Virology, Bernhard-Nocht-Institute for Tropical Medicine, 20359 Hamburg, Germany.
Charlotte Uetrechtthe Heinrich Pette Institute, Leibniz Institute for Experimental Virology, 20251 Hamburg, Germany, and.
Stephan GüntherFrom the Department of Virology, Bernhard-Nocht-Institute for Tropical Medicine, 20359 Hamburg, Germany.
Sophia ReindlFrom the Department of Virology, Bernhard-Nocht-Institute for Tropical Medicine, 20359 Hamburg, Germany, reindl@bnitm.de.ORCID 0000-0002-7630-5199
Bernhard Nocht Institute for Tropical Medicine · DELeibniz Institute of Virology (LIV) · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Viruses rely on many host cell processes, including the cellular transcription machinery. Segmented negative-strand RNA viruses (sNSV) in particular cannot synthesize the 5'-cap structure for their mRNA but cleave off cellular caps and use the resulting oligonucleotides as primers for their transcription. This cap-snatching mechanism, involving a viral cap-binding site and RNA endonuclease, is both virus-specific and essential for viral proliferation and therefore represents an attractive drug target. Here, we present biochemical and structural results on the putative cap-snatching endonuclease of Crimean-Congo hemorrhagic fever virus (CCHFV), a highly pathogenic bunyavirus belonging to the Nairoviridae family, and of two additional nairoviruses, Erve virus (EREV) and Nairobi sheep disease virus (NSDV). Our findings are presented in the context of other cap-snatching endonucleases, such as the enzymatically active endonuclease from Rift Valley fever virus (RVFV), from Arenaviridae and Bunyavirales, belonging to the His- and His+ endonucleases, respectively, according to the absence or presence of a metal ion-coordinating histidine in the active site. Mutational and metal-binding experiments revealed the presence of only acidic metal-coordinating residues in the active site of the CCHFV domain and a unique active-site conformation that was intermediate between those of His+ and His- endonucleases. On the basis of small-angle X-ray scattering (SAXS) and homology modeling results, we propose a protein topology for the CCHFV domain that, despite its larger size, has a structure overall similar to those of related endonucleases. These results suggest structural and functional conservation of the cap-snatching mechanism among sNSVs.

Indexed as

Amino Acid SequenceCatalytic DomainEndonucleasesModels, MolecularRNA CapsRNA, ViralRNA VirusesEndonucleasesRNA CapsRNA, Viralcap-snatchingendonucleaseenzyme structuremetal ion–protein interactionnairovirusnegative-strand RNA virusrecombinant protein expressionsmall-angle X-ray scattering (SAXS)structure-functionviral transcription

Identifiers

PMID30348898
PMCPMC6314124
OpenAlexW2896755649

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.