Evidence map›Paper›PMID 30348132›Full record

ArticleBMC cancer2018

The hypermethylation of p16 gene exon 1 and exon 2: potential biomarkers for colorectal cancer and are associated with cancer pathological staging.

Xiaoxia Ye, Mingming Mo, Simin Xu, Qingjin Yang, Minhua Wu, Junjie Zhang, Bin Chen, Jian Li, Yu Zhong, Qionglin Huang and 1 more

Open access · goldAbstract read
In one paragraph

Article in BMC cancer, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 18 citations in OpenAlex.

  1. Review
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  7. Review
  8. Review
  9. Sex and Race-Related DNA Methylation Changes in Hepatocellular Carcinoma.International journal of molecular sciences · 2021
    Review
  10. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Xiaoxia YeDepartment of Histology and Embryology, Guangdong Medical University, Zhanjiang, 524023, People's Republic of China.
Mingming MoAnalysis Center, Guangdong Medical University, Zhanjiang, 524023, People's Republic of China.
Simin XuInstitute of Neurology, Affiliated Hospital, Guangdong Medical University, No. 2 Wenming Dong Road, Zhanjiang, Guangdong, 524023, People's Republic of China.
Qingjin YangAnalysis Center, Guangdong Medical University, Zhanjiang, 524023, People's Republic of China.
Minhua WuDepartment of Histology and Embryology, Guangdong Medical University, Zhanjiang, 524023, People's Republic of China.
Junjie ZhangAnalysis Center, Guangdong Medical University, Zhanjiang, 524023, People's Republic of China.
Bin ChenAnalysis Center, Guangdong Medical University, Zhanjiang, 524023, People's Republic of China.
Jian LiAnalysis Center, Guangdong Medical University, Zhanjiang, 524023, People's Republic of China.
Yu ZhongAnalysis Center, Guangdong Medical University, Zhanjiang, 524023, People's Republic of China.
Qionglin HuangAnalysis Center, Guangdong Medical University, Zhanjiang, 524023, People's Republic of China.
Chun CaiAnalysis Center, Guangdong Medical University, Zhanjiang, 524023, People's Republic of China. caichun2006@tom.com.ORCID http://orcid.org/0000-0003-0629-3337
Guangdong Medical College · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundTumor suppressor gene p16 promoter hypermethylation has been widely studied in colorectal cancer (CRC), yet its clinicopathological significance remains controversial. The methylation alterations of other regions within p16 gene are still rarely researched. The present study aimed to explore the methylation changes of p16 gene body in CRC and to find whether they were associated with clinicopathological staging of CRC.

methodsPaired colorectal cancer tissues and corresponding adjacent normal tissues from 30 CRC patients were collected. The methylation levels of two CpG islands within p16 gene body, exon 1 and exon 2, were accurately assessed simultaneously by a LC-MS/MS method. The p16 protein expressions were assessed by immunohistochemistry assay. Statistical analyses were carried out using SPSS 17.0 software. Heat-map analysis was carried out by HemI 1.0 software.

resultsIn the present study, CRC tissues showed more highly methylated than adjacent normal tissues at both CpG islands of p16 gene. And exon 2 hypermethylation was higher and more frequent than exon 1. The ROC curve analysis showed that the simultaneous use of both indicators had excellent sensitivity and specificity for distinguishing CRC tissues and adjacent normal tissues. Following, the methylation level of p16 exon 1/2 was negatively related to p16 protein expression. Further correlation analysis revealed that p16 exon 1 hypermethylation was associated with N/Dukes staging (p = 0.033), and p16 exon 2 hypermethylaiton was associated with T staging (p = 0.035).

conclusionsThe p16 gene body was remarkably hyper-methylated in CRC tissues and associated with p16 protein expression and cancer clinicopathological staging. The combination of p16 exon 1 and exon 2 could better reflect the overall methylation status of p16 gene body and provide potential biomarkers of CRC.

Indexed as

Biomarkers, TumorDNA MethylationExonsBase SequenceChromatography, LiquidColorectal NeoplasmsCpG IslandsCyclin-Dependent Kinase Inhibitor p16FemaleGene Expression Regulation, NeoplasticHumansImmunohistochemistryMaleNeoplasm StagingPromoter Regions, GeneticROC CurveBiomarkers, TumorCyclin-Dependent Kinase Inhibitor p16Colorectal cancerDNA methylationExon 1Exon 2p16 gene

Identifiers

PMID30348132
PMCPMC6198490
OpenAlexW2897596934

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.