Evidence map›Paper›PMID 30348081›Full record

ArticleBMC microbiology2018

In vivo competition and horizontal gene transfer among distinct Staphylococcus aureus lineages as major drivers for adaptational changes during long-term persistence in humans.

Lars Langhanki, Petya Berger, Janina Treffon, Francesco Catania, Barbara C Kahl, Alexander Mellmann

Abstract read
In one paragraph

Article in BMC microbiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Intraspecific diversity ofMicrobiology spectrum · 2026
    Article
  2. Article
  3. Antibiotics (Basel, Switzerland) · 2025
    Review
  4. Regulation of airway fumarate by host and pathogen promotesbioRxiv : the preprint server for biology · 2025
    Article
  5. Article
  6. Article
  7. Pathogens (Basel, Switzerland) · 2021
    Review
  8. Article
  9. Article
  10. Toxins · 2020
    Observational
  11. Review
  12. Antibiotic Treatment and Age Are Associated WithFrontiers in microbiology · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Lars LanghankiInstitute of Hygiene, University Hospital Münster, Robert-Koch Straße 41, Münster, 48149, Germany.
Petya BergerInstitute of Hygiene, University Hospital Münster, Robert-Koch Straße 41, Münster, 48149, Germany.
Janina TreffonInstitute of Med. Microbiology, University Hospital Muenster, Domagkstraße 10, 48149, Münster, Germany.
Francesco CataniaInstitute for Evolution and Biodiversity Muenster, Hüfferstraße 1, 48149, Münster, Germany.
Barbara C KahlInstitute of Med. Microbiology, University Hospital Muenster, Domagkstraße 10, 48149, Münster, Germany.
Alexander MellmannInstitute of Hygiene, University Hospital Münster, Robert-Koch Straße 41, Münster, 48149, Germany. mellmann@uni-muenster.de.ORCID 0000-0002-0649-5185

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe airways of the majority of adolescent cystic fibrosis (CF) patients are persistently colonized or infected by Staphylococcus aureus. Using whole genome sequencing, we studied the evolutionary traits within a S. aureus population in the airways of a CF patient hypothesizing that horizontal gene transfer (HGT) and inter-bacterial interaction play a major role in adaptation during long-term persistence.

resultsWhole genome sequencing of 21 S. aureus isolates spanning 13 years resulted in seven lineages defined by the spa types t012, t021, t331, t338, t364, t056, and t2351. Of these, the successfully persisting lineages t012 and t021 were closely related suggesting the evolution of t021 from t012, which was further corroborated by a nearly identical, syntenic set of mobile genetic elements. During transformation from t012 to t021, an increase of genomic changes including HGT from other S. aureus lineages was detected.

conclusionsIn summary, our in vivo data enabled us to conceptualize an evolutionary model showing the impact of HGT and inter-bacterial interaction on bacterial long-term adaptation to the human host during CF.

Indexed as

Evolution, MolecularGene Transfer, HorizontalAdaptation, PhysiologicalCystic FibrosisHumansInterspersed Repetitive SequencesMicrobial InteractionsPhenotypeRespiratory SystemStaphylococcal InfectionsStaphylococcus aureusWhole Genome SequencingAdaptationCystic fibrosisGenome sequencingHorizontal gene transferStaphylococcus aureus

Identifiers

PMID30348081
PMCPMC6198438

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.