ArticleBMC genomics2018
Comparative genome and transcriptome analysis of diatom, Skeletonema costatum, reveals evolution of genes for harmful algal bloom.
Article in BMC genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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Who cites it
19 citing papers in PubMed, 84 citations in OpenAlex.
- How to upgrade stolen organelles into permanent plastids: A comparative transcriptomic perspective.Proceedings of the National Academy of Sciences of the United States of America · 2025Article
- The draft genome sequences of the cosmopolitan centric diatom, the genus Skeletonema.Scientific data · 2025Article
- High-quality genome assembly and annotation of Thalassiosira rotula (synonym of Thalassiosira gravida).Scientific data · 2025Article
- First regional reference database of northern Adriatic diatom transcriptomes.Scientific reports · 2024Article
- Channels of Evolution: Unveiling Evolutionary Patterns in Diatom CaPlants (Basel, Switzerland) · 2024Article
- Chromosome-level genome assembly of marine diatom Skeletonema tropicum.Scientific data · 2024Article
- Omics Approaches in Invasion Biology: Understanding Mechanisms and Impacts on Ecological Health.Plants (Basel, Switzerland) · 2023Review
- Improving the genome and proteome annotations of the marine model diatomMarine life science & technology · 2023Article
- Draft genome assembly and sequencing dataset of the marine diatomData in brief · 2022Article
- What Was Old Is New Again: The Pennate DiatomMarine drugs · 2022Review
- Recent Progress on Systems and Synthetic Biology of Diatoms for Improving Algal Productivity.Frontiers in bioengineering and biotechnology · 2022Review
- Comparative analysis of full-length mitochondrial genomes of five Skeletonema species reveals conserved genome organization and recent speciation.BMC genomics · 2021Article
- Re-examination of two diatom reference genomes using long-read sequencing.BMC genomics · 2021Article
- Diatoms recovery from wastewater: Overview from an ecological and economic perspective.Journal of water process engineering · 2021Article
- Article
- Genome sequencing, assembly, and annotation of the self-flocculating microalga Scenedesmus obliquus AS-6-11.BMC genomics · 2020Article
- Diatom Molecular Research Comes of Age: Model Species for Studying Phytoplankton Biology and Diversity.The Plant cell · 2020Review
- Regulation of Carbon Metabolism by Environmental Conditions: A Perspective From Diatoms and Other Chromalveolates.Frontiers in plant science · 2020Review
- Marine Natural Products from Microalgae: An -Omics Overview.Marine drugs · 2019Review
Corrections and comments
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Authors and funding
6 authors at 3 institutions in 2 countries.
Funding
Abstract
backgroundDiatoms play a great role in carbon fixation with about 20% of the whole fixation in the world. However, harmful algal bloom as known as red tide is a major problem in environment and fishery industry. Even though intensive studies have been conducted so far, the molecular mechanism behind harmful algal bloom was not fully understood. There are two major diatoms have been sequenced, but more diatoms should be examined at the whole genome level, and evolutionary genome studies were required to understand the landscape of molecular mechanism of the harmful algal bloom.
resultsHere we sequenced the genome of Skeletonema costatum, which is the dominant diatom in Japan causing a harmful algal bloom, and also performed RNA-sequencing analysis for conditions where harmful algal blooms often occur. As results, we found that both evolutionary genomic and comparative transcriptomic studies revealed genes for oxidative stress response and response to cytokinin is a key for the proliferation of the diatom.
conclusionsDiatoms causing harmful algal blooms have gained multi-copy of genes related to oxidative stress response and response to cytokinin and obtained an ability to intensive gene expression at the blooms.
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