Evidence map›Paper›PMID 30346988›Full record

ArticlePLoS pathogens2018

Transcription apparatus of the yeast virus-like elements: Architecture, function, and evolutionary origin.

Michal Sýkora, Martin Pospíšek, Josef Novák, Silvia Mrvová, Libor Krásný, Václav Vopálenský

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. The evolutionary ecology of fungal killer phenotypes.Proceedings. Biological sciences · 2023
    Review
  7. Article
  8. Review
  9. Transcriptome view of a killer: African swine fever virus.Biochemical Society transactions · 2020
    Review
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Michal SýkoraDepartment of Genetics and Microbiology, Faculty of Science, Charles University, Prague, Czech Republic.ORCID 0000-0001-8049-0748
Martin PospíšekDepartment of Genetics and Microbiology, Faculty of Science, Charles University, Prague, Czech Republic.ORCID 0000-0002-9490-8911
Josef NovákDepartment of Genetics and Microbiology, Faculty of Science, Charles University, Prague, Czech Republic.ORCID 0000-0002-9764-6195
Silvia MrvováDepartment of Genetics and Microbiology, Faculty of Science, Charles University, Prague, Czech Republic.ORCID 0000-0002-1159-7864
Libor KrásnýInstitute of Microbiology, Academy of Sciences of the Czech Republic, Prague, Czech Republic.ORCID 0000-0002-4120-4347
Václav VopálenskýDepartment of Genetics and Microbiology, Faculty of Science, Charles University, Prague, Czech Republic.ORCID 0000-0002-4858-4645
Charles University · CZCzech Academy of Sciences · CZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Extrachromosomal hereditary elements such as organelles, viruses, and plasmids are important for the cell fitness and survival. Their transcription is dependent on host cellular RNA polymerase (RNAP) or intrinsic RNAP encoded by these elements. The yeast Kluyveromyces lactis contains linear cytoplasmic DNA virus-like elements (VLEs, also known as linear plasmids) that bear genes encoding putative non-canonical two-subunit RNAP. Here, we describe the architecture and identify the evolutionary origin of this transcription machinery. We show that the two RNAP subunits interact in vivo, and this complex interacts with another two VLE-encoded proteins, namely the mRNA capping enzyme and a putative helicase. RNAP, mRNA capping enzyme and the helicase also interact with VLE-specific DNA in vivo. Further, we identify a promoter sequence element that causes 5' mRNA polyadenylation of VLE-specific transcripts via RNAP slippage at the transcription initiation site, and structural elements that precede the termination sites. As a result, we present a first model of the yeast virus-like element transcription initiation and intrinsic termination. Finally, we demonstrate that VLE RNAP and its promoters display high similarity to poxviral RNAP and promoters of early poxviral genes, respectively, thereby pointing to their evolutionary origin.

Indexed as

Evolution, MolecularPromoter Regions, GeneticResponse ElementsTranscription, GeneticBase SequenceCytoplasmDNA-Directed RNA PolymerasesFungal ProteinsGene Expression Regulation, FungalKluyveromycesNucleic Acid ConformationPolyadenylationRNA StabilitySequence HomologyVirusesDNA-Directed RNA PolymerasesFungal Proteins

Identifiers

PMID30346988
PMCPMC6211774
OpenAlexW2896525135

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.