Evidence map›Paper›PMID 30346175›Full record

ArticleNano letters2019

Direction Matters: Monovalent Streptavidin/Biotin Complex under Load.

Steffen M Sedlak, Leonard C Schendel, Marcelo C R Melo, Diana A Pippig, Zaida Luthey-Schulten, Hermann E Gaub, Rafael C Bernardi

Abstract read
In one paragraph

Article in Nano letters, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

  1. Article
  2. Review
  3. UltrastrongScience advances · 2025
    Article
  4. Article
  5. The strongest protein binder is surprisingly labile.Protein science : a publication of the Protein Society · 2024
    Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Interaction of theACS nanoscience Au · 2023
    Article
  12. Article
  13. Acoustic force spectroscopy reveals subtle differences in cellulose unbinding behavior of carbohydrate-binding modules.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  14. Mechanical Stabilization of a Bacterial Adhesion Complex.Journal of the American Chemical Society · 2022
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Steffen M SedlakLehrstuhl für Angewandte Physik and Center for NanoScience (CeNS) , Ludwig-Maximilians-Universität München , Amalienstrasse 54 , 80799 Munich , Germany.ORCID 0000-0002-7037-1793
Leonard C SchendelLehrstuhl für Angewandte Physik and Center for NanoScience (CeNS) , Ludwig-Maximilians-Universität München , Amalienstrasse 54 , 80799 Munich , Germany.ORCID 0000-0002-1986-2693
Diana A PippigLehrstuhl für Angewandte Physik and Center for NanoScience (CeNS) , Ludwig-Maximilians-Universität München , Amalienstrasse 54 , 80799 Munich , Germany.
Zaida Luthey-Schulten
Hermann E GaubLehrstuhl für Angewandte Physik and Center for NanoScience (CeNS) , Ludwig-Maximilians-Universität München , Amalienstrasse 54 , 80799 Munich , Germany.ORCID 0000-0002-4220-6088
Rafael C BernardiORCID 0000-0003-0758-2026

Funding

WHOLE CELL SIMULATIONP41GM104601 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI TAJKHORSHID, EMAD · 2012 to 2021
$19.0M
Resource for Macromolecular Modeling and VisualizationR24GM145965 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI Emad Tajkhorshid · 2022 to 2026
$6.2M
NIGMS NIH HHS P41 GM104601NIGMS NIH HHS R24 GM145965
6 · The paper itself

Abstract

Novel site-specific attachment strategies combined with improvements of computational resources enable new insights into the mechanics of the monovalent biotin/streptavidin complex under load and forced us to rethink the diversity of rupture forces reported in the literature. We discovered that the mechanical stability of this complex depends strongly on the geometry in which force is applied. By atomic force microscopy-based single molecule force spectroscopy we found unbinding of biotin to occur beyond 400 pN at force loading rates of 10 nN/s when monovalent streptavidin was tethered at its C-terminus. This value is about twice as high than that for N-terminal attachment. Steered molecular dynamics simulations provided a detailed picture of the mechanics of the unbinding process in the corresponding force loading geometries. Using machine learning techniques, we connected findings from hundreds of simulations to the experimental results, identifying different force propagation pathways. Interestingly, we observed that depending on force loading geometry, partial unfolding of N-terminal region of monovalent streptavidin occurs before biotin is released from the binding pocket.

Indexed as

atomic force microscopymachine learningmolecular dynamicssingle-molecule force spectroscopyStreptavidin/biotin

Identifiers

PMID30346175
PMCPMC6486461

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.