Evidence map›Paper›PMID 30343903›Full record

ArticleCell2018

Assembly and Translocation of a CRISPR-Cas Primed Acquisition Complex.

Kaylee E Dillard, Maxwell W Brown, Nicole V Johnson, Yibei Xiao, Adam Dolan, Erik Hernandez, Samuel D Dahlhauser, Yoori Kim, Logan R Myler, Eric V Anslyn and 2 more

Abstract read
In one paragraph

Article in Cell, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. CRISPR-based nucleic acid diagnostics for pathogens.Trends in analytical chemistry : TRAC · 2023
    Review
  19. Article
  20. Single Molecule Imaging of DNA-Protein Interactions Using DNA Curtains.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Kaylee E DillardDepartment of Molecular Biosciences and Institute for Cellular and Molecular Biology, University of Texas at Austin, Austin, TX 78712, USA.
Maxwell W BrownDepartment of Molecular Biosciences and Institute for Cellular and Molecular Biology, University of Texas at Austin, Austin, TX 78712, USA.
Nicole V JohnsonDepartment of Molecular Biosciences and Institute for Cellular and Molecular Biology, University of Texas at Austin, Austin, TX 78712, USA.
Yibei XiaoDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA.
Adam DolanDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA.
Erik HernandezDepartment of Chemistry, University of Texas at Austin, Austin, TX 78712, USA.
Samuel D DahlhauserDepartment of Chemistry, University of Texas at Austin, Austin, TX 78712, USA.
Yoori KimDepartment of Molecular Biosciences and Institute for Cellular and Molecular Biology, University of Texas at Austin, Austin, TX 78712, USA.
Logan R MylerDepartment of Molecular Biosciences and Institute for Cellular and Molecular Biology, University of Texas at Austin, Austin, TX 78712, USA.
Eric V AnslynDepartment of Chemistry, University of Texas at Austin, Austin, TX 78712, USA.
Ailong KeDepartment of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA.
Ilya J FinkelsteinDepartment of Molecular Biosciences and Institute for Cellular and Molecular Biology, University of Texas at Austin, Austin, TX 78712, USA; Center for Systems and Synthetic Biology, University of Texas at Austin, Austin, TX 78712, USA. Electronic address: ilya@finkelsteinlab.org.

Funding

Mechanistic Investigation of RNA-Mediated Gene Regulation and ImmunityR35GM118174 · NIGMS · YALE UNIVERSITY · PI AILONG KE · 2016 to 2026
$7.9M
Mechanism, specificity, and design of CRISPR RNA-mediated gene regulationR01GM124141 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI FINKELSTEIN, ILYA J · 2017 to 2020
$1.2M
Dynamic target recognition and complex assembly of the Type I-E CRISPR-Cas systemF31GM125201 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI DILLARD, KAYLEE E · 2018 to 2020
$81k
Single-Molecule Studies of Human DNA Double Strand Break RepairF99CA212452 · NCI · UNIVERSITY OF TEXAS AT AUSTIN · PI MYLER, LOGAN ROSS · 2016 to 2017
$69k
Howard Hughes Medical InstituteNCI NIH HHS F99 CA212452NIGMS NIH HHS F31 GM125201NIGMS NIH HHS R01 GM124141NIGMS NIH HHS R35 GM118174
6 · The paper itself

Abstract

CRISPR-Cas systems confer an adaptive immunity against viruses. Following viral injection, Cas1-Cas2 integrates segments of the viral genome (spacers) into the CRISPR locus. In type I CRISPR-Cas systems, efficient "primed" spacer acquisition and viral degradation (interference) require both the Cascade complex and the Cas3 helicase/nuclease. Here, we present single-molecule characterization of the Thermobifida fusca (Tfu) primed acquisition complex (PAC). We show that TfuCascade rapidly samples non-specific DNA via facilitated one-dimensional diffusion. Cas3 loads at target-bound Cascade and the Cascade/Cas3 complex translocates via a looped DNA intermediate. Cascade/Cas3 complexes stall at diverse protein roadblocks, resulting in a double strand break at the stall site. In contrast, Cas1-Cas2 samples DNA transiently via 3D collisions. Moreover, Cas1-Cas2 associates with Cascade and translocates with Cascade/Cas3, forming the PAC. PACs can displace different protein roadblocks, suggesting a mechanism for long-range spacer acquisition. This work provides a molecular basis for the coordinated steps in CRISPR-based adaptive immunity.

Indexed as

CRISPR-Cas SystemsActinomycetalesBacterial ProteinsCRISPR-Associated ProteinsDNA, ViralProtein MultimerizationSingle Molecule ImagingBacterial ProteinsCRISPR-Associated ProteinsDNA, ViralCascadeCRISPRDNA curtainsfluorescence microscopyprimed acquisition

Identifiers

PMID30343903
PMCPMC6441324

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.