Evidence map›Paper›PMID 30343385›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2019

Delimitation of wheat ph1b deletion and development of ph1b-specific DNA markers.

Yadav Gyawali, Wei Zhang, Shiaoman Chao, Steven Xu, Xiwen Cai

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In one paragraph

Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
3.4field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 37 citations in OpenAlex.

  1. Review
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  9. Mapping and characterization of rust resistance genes Lr53 and Yr35 introgressed from Aegilops species.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024
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  15. Variations of wheat (Frontiers in plant science · 2022
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  17. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Yadav GyawaliDepartment of Plant Sciences, North Dakota State University, Fargo, ND, 58108, USA.
Wei ZhangDepartment of Plant Sciences, North Dakota State University, Fargo, ND, 58108, USA.
Shiaoman ChaoUSDA-ARS, Red River Valley Agricultural Research Center, Fargo, ND, 58102, USA.
Steven XuUSDA-ARS, Red River Valley Agricultural Research Center, Fargo, ND, 58102, USA.
Xiwen CaiDepartment of Plant Sciences, North Dakota State University, Fargo, ND, 58108, USA. xiwen.cai@ndsu.edu.ORCID http://orcid.org/0000-0002-3937-1074
North Dakota State University · USEdward T. Schafer Agricultural Research Center · US

Funding

National Institute of Food and Agriculture 2016-67014-24455
6 · The paper itself

Abstract

key messageWe detected the deletion breakpoints of wheat ph1b mutant and the actual size of the deletion. Also, we developed ph1b deletion-specific markers useful for ph1b-mediated gene introgression and genome studies. The Ph1 (pairing homoeologous) locus has been considered a major genetic system for the diploidized meiotic behavior of the allopolyploid genome in wheat. It functions as a defense system against meiotic homoeologous pairing and recombination in polyploid wheat. A large deletion of the genomic region harboring Ph1 on the long arm of chromosome 5B (5BL) led to the ph1b mutant in hexaploid wheat 'Chinese Spring,' which has been widely used to induce meiotic homoeologous recombination for gene introgression from wild grasses into wheat. However, the breakpoints and physical size of the deletion remain undetermined. In the present study, we first anchored the ph1b deletion on 5BL by the high-throughput wheat 90K SNP assay and then delimited the deletion to a genomic region of 60,014,523 bp by chromosome walking. DNA marker and sequence analyses detected the nucleotide positions of the distal and proximal breakpoints (DB and PB) of the ph1b deletion and the deletion junction as well. This will facilitate understanding of the genomic region harboring the Ph1 locus in wheat. In addition, we developed user-friendly DNA markers specific for the ph1b deletion. These new ph1b deletion-specific markers will dramatically improve the efficacy of the ph1b mutant in the meiotic homoeologous recombination-based gene introgression and genome studies in wheat and its relatives.

Indexed as

Genetic MarkersSequence DeletionChromosomes, PlantChromosome WalkingHomologous RecombinationPolymerase Chain ReactionPolymorphism, Single NucleotidePolyploidySequence Tagged SitesTriticumGenetic Markers

Identifiers

PMID30343385
OpenAlexW2896334691

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.