Evidence map›Paper›PMID 30342747›Full record

ArticleBiophysical journal2018

In-Cell NMR within Budding Yeast Reveals Cytoplasmic Masking of Hydrophobic Residues of FG Repeats.

Kathryn P Wall, Loren E Hough

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Review
  3. Structural biases in disordered proteins are prevalent in the cell.Nature structural & molecular biology · 2024
    Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
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  10. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Kathryn P WallBioFrontiers Institute, University of Colorado, Boulder, Colorado; Department of Biochemistry, University of Colorado, Boulder, Colorado.
Loren E HoughBioFrontiers Institute, University of Colorado, Boulder, Colorado; Department of Physics, University of Colorado, Boulder, Colorado. Electronic address: hough@colorado.edu.
University of Colorado Boulder · US

Funding

Molecular dissection of the C-terminal tails of tubulin and the effect of their polyglycylation on binding and microtubule assemblyR35GM119755 · NIGMS · UNIVERSITY OF COLORADO · PI HOUGH, LOREN E · 2016 to 2020
$1.8M
Purchase of 800 MHz NMR SpectrometerS10RR016649 · NCRR · UNIVERSITY OF COLORADO AT BOULDER · PI PARDI, ARTHUR · 2002 to 2002
$500k
PURCHASE OF 600 MHZ NMR AND UPGRADE OF NMR FACILITIESS10RR011969 · NCRR · UNIVERSITY OF COLORADO AT BOULDER · PI PARDI, ARTHUR · 1997 to 1997
–
NCRR NIH HHS S10 RR011969NCRR NIH HHS S10 RR016649NIGMS NIH HHS R35 GM119755
6 · The paper itself

Abstract

In-cell NMR spectroscopy is a powerful tool to determine the properties of proteins and nucleic acids within living cells. In-cell NMR can give site-specific measurements of interactions, modifications, and dynamics as well as their modulation by the cellular environment. In-cell NMR requires selective incorporation of heavy isotopes into a protein of interest, either through the introduction of exogenously produced protein to a cell's interior or the selective overexpression of a protein. We developed conditions to allow the use of Saccharomyces cerevisiae, which was chosen because of its genetic tractability, as a eukaryotic expression system for in-cell NMR. We demonstrate this technique using a fragment of S. cerevisiae Nsp1, an FG Nup. FG Nups are intrinsically disordered proteins containing phenylalanine (F)-glycine (G) repeats and form the selective barrier within the nuclear pore complex. Yeast FG Nups have previously been shown to be maintained in a highly dynamic state within living bacteria as measured by in-cell NMR. Interactions thought to stabilize this dynamic state are also present in the protein's native organism, although site specificity of interaction is different between the two cytosols.

Indexed as

GlycineNuclear Magnetic Resonance, BiomolecularPhenylalanineRepetitive Sequences, Amino AcidAmino Acid SequenceCytoplasmHydrophobic and Hydrophilic InteractionsMolecular Dynamics SimulationNuclear Pore Complex ProteinsNuclear ProteinsProtein ConformationSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsGlycineNSP1 protein, S cerevisiaeNuclear Pore Complex ProteinsNuclear ProteinsPhenylalanineSaccharomyces cerevisiae Proteins

Identifiers

PMID30342747
PMCPMC6225093
OpenAlexW2892727367

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.