Evidence map›Paper›PMID 30342069›Full record

ReviewNeuroscience research2019

Optical consequences of a genetically-encoded voltage indicator with a pH sensitive fluorescent protein.

Bok Eum Kang, Sungmoo Lee, Bradley J Baker

Open access · hybridAbstract readReview
In one paragraph

Review in Neuroscience research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.9field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Approaches to Study Gap Junctional Coupling.Frontiers in cellular neuroscience · 2021
    Review
  5. Article
  6. Review
  7. Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 1 country.

Bok Eum KangCenter for Functional Connectomics, Korea Institute of Science and Technology, Seoul, Republic of Korea; Division of Bio-Medical Science & Technology, KIST School, Korea University of Science and Technology, Seoul 02792, Republic of Korea.
Sungmoo LeeCenter for Functional Connectomics, Korea Institute of Science and Technology, Seoul, Republic of Korea; Program in Nanoscience and Technology, Department of Transdisciplinary Studies, Graduate School of Convergence Science and Technology, Seoul National University. Suwon, Republic of Korea.
Bradley J BakerCenter for Functional Connectomics, Korea Institute of Science and Technology, Seoul, Republic of Korea; Division of Bio-Medical Science & Technology, KIST School, Korea University of Science and Technology, Seoul 02792, Republic of Korea. Electronic address: bradley.baker19@gmail.com.
Korea Institute of Science and Technology · KRKorea University of Science and Technology · KRSeoul National University · KR

Funding

New approaches for better protein voltage sensorsU01NS099691 · NINDS · YALE UNIVERSITY · PI COHEN, LAWRENCE B · 2016 to 2018
$2.1M
NINDS NIH HHS U01 NS099691
6 · The paper itself

Abstract

Genetically-Encoded Voltage Indicators (GEVIs) are capable of converting changes in membrane potential into an optical signal. Here, we focus on recent insights into the mechanism of ArcLight-type probes and the consequences of utilizing a pH-dependent Fluorescent Protein (FP). A negative charge on the exterior of the β-can of the FP combined with a pH-sensitive FP enables voltage-dependent conformational changes to affect the fluorescence of the probe. This hypothesis implies that interaction/dimerization of the FP creates a microenvironment for the probe that is altered via conformational changes. This mechanism explains why a pH sensitive FP with a negative charge on the outside of the β-can is needed, but also suggests that pH could affect the optical signal as well. To better understand the effects of pH on the voltage-dependent signal of ArcLight, the intracellular pH (pHi) was tested at pH 6.8, 7.2, or 7.8. The resting fluorescence of ArcLight gets brighter as the pHi increases, yet only pH 7.8 significantly affected the ΔF/F. ArcLight could also simultaneously report voltage and pH changes during the acidification of a neuron firing multiple action potentials revealing different buffering capacities of the soma versus the processes of the cell.

Indexed as

Hydrogen-Ion ConcentrationAction PotentialsAnimalsFluorescenceFluorescent DyesGreen Fluorescent ProteinsHEK293 CellsHumansLuminescent ProteinsMembrane PotentialsMiceNeuronsPatch-Clamp TechniquesRecombinant Fusion ProteinsVoltage-Sensitive Dye ImagingArclight fusion proteinFluorescent DyesGreen Fluorescent ProteinsLuminescent ProteinsPHluorinRecombinant Fusion ProteinsArcLightGEVIpH imagingSuper ecliptic pHluorinVoltage imaging

Identifiers

PMID30342069
PMCPMC6470055
OpenAlexW2897976505

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.