Evidence map›Paper›PMID 30342007›Full record

ArticleJournal of molecular biology2018

TRIM25 Binds RNA to Modulate Cellular Anti-viral Defense.

Jacint G Sanchez, Konstantin M J Sparrer, Cindy Chiang, Rebecca A Reis, Jessica J Chiang, Matthew A Zurenski, Yueping Wan, Michaela U Gack, Owen Pornillos

Open access · greenAbstract read
In one paragraph

Article in Journal of molecular biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 92 citations in OpenAlex.

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  9. A minimal complex of KHNYN and zinc-finger antiviral protein binds and degrades single-stranded RNA.Proceedings of the National Academy of Sciences of the United States of America · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Jacint G SanchezDepartment of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, VA, USA.
Konstantin M J SparrerDepartment of Microbiology, University of Chicago, Chicago, IL, USA.
Cindy ChiangDepartment of Microbiology, University of Chicago, Chicago, IL, USA.
Rebecca A ReisDepartment of Microbiology, University of Chicago, Chicago, IL, USA.
Jessica J ChiangDepartment of Microbiology and Immunobiology, Harvard Medical School, Boston, MA, USA.
Matthew A ZurenskiDepartment of Microbiology, University of Chicago, Chicago, IL, USA.
Yueping WanDepartment of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, VA, USA.
Michaela U GackDepartment of Microbiology, University of Chicago, Chicago, IL, USA. Electronic address: mgack@uchicago.edu.
Owen PornillosDepartment of Molecular Physiology and Biological Physics, University of Virginia, Charlottesville, VA, USA. Electronic address: opornillos@virginia.edu.
University of Chicago · USUniversity of Virginia · USHarvard University · US

Funding

Molecular And Cellular Biology Training ProgramT32GM007183 · NIGMS · UNIVERSITY OF CHICAGO · PI GLICK, BENJAMIN S, RICE, PHOEBE A · 1985 to 2021
$23.9M
Translational Control in the Hepatitis C VirusS06GM008136 · NIGMS · NEW MEXICO STATE UNIVERSITY LAS CRUCES · PI KUEHN, GLENN D · 1989 to 2011
$23.2M
TRAINING IN CELL AND MOLECULAR BIOLOGYT32GM008136 · NIGMS · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI STUKENBERG, P. TODD · 1985 to 2020
$8.5M
Regulation of Host Innate Immunity Against Viral InfectionR01AI087846 · NIAID · UNIVERSITY OF CHICAGO · PI GACK, MICHAELA ULRIKE · 2010 to 2020
$3.9M
Flavivirus NS3-mediated Innate Immune EscapeR01AI127774 · NIAID · UNIVERSITY OF CHICAGO · PI GACK, MICHAELA ULRIKE · 2016 to 2020
$2.6M
Structural Virology of Tripartite Motif ProteinsR01GM112508 · NIGMS · UNIVERSITY OF VIRGINIA · PI PORNILLOS, OWEN · 2014 to 2018
$1.6M
Structural Virology of Tripartite Motif ProteinsR01AI150479 · NIAID · UNIVERSITY OF VIRGINIA · PI PORNILLOS, OWEN · 2019 to 2021
$982k
NIAID NIH HHS R01 AI087846NIAID NIH HHS R01 AI127774NIAID NIH HHS R01 AI150479NIGMS NIH HHS R01 GM112508NIGMS NIH HHS S06 GM008136NIGMS NIH HHS T32 GM007183NIGMS NIH HHS T32 GM008136
6 · The paper itself

Abstract

TRIM25 is a multi-domain, RING-type E3 ubiquitin ligase of the tripartite motif family that has important roles in multiple RNA-dependent processes. In particular, TRIM25 functions as an effector of RIG-I and ZAP, which are innate immune sensors that recognize viral RNA and induce ubiquitin-dependent anti-viral response mechanisms. TRIM25 is reported to also bind RNA, but the molecular details of this interaction or its relevance to anti-viral defense have not been elucidated. Here, we characterize the RNA-binding activity of TRIM25 and find that the protein binds both single-stranded and double-stranded RNA. Multiple regions of TRIM25 contribute to this functionality, including the C-terminal SPRY domain and a lysine-rich motif in the linker segment connecting the SPRY and coiled-coil domains. RNA binding modulates TRIM25's ubiquitination activity in vitro, its localization in cells, and its anti-viral activity. Taken together with other studies, our results indicate that RNA binding by TRIM25 has at least three important functional consequences: by enhancing ubiquitination activity, either through allosteric effects or through clustering of multiple TRIM25 molecules; by modulating the multi-domain structure of the TRIM25 dimer, and thereby structural coupling of the SPRY and RBCC elements during the ubiquitination reaction; and by facilitating subcellular localization of the E3 ligase during virus infection.

Indexed as

Allosteric RegulationAntiviral AgentsBinding SitesDengue VirusHEK293 CellsHeLa CellsHumansInfluenza A virusProtein BindingProtein DomainsRNA, Double-StrandedRNA, ViralTranscription FactorsTripartite Motif ProteinsUbiquitinationUbiquitin-Protein LigasesAntiviral AgentsRNA, Double-StrandedRNA, ViralTranscription FactorsTRIM25 protein, humanTripartite Motif ProteinsUbiquitin-Protein LigasesRNA recognitionsignalingubiquitination

Identifiers

PMID30342007
PMCPMC6289755
OpenAlexW2896532093

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.