Evidence map›Paper›PMID 30341796›Full record

ArticleProtein science : a publication of the Protein Society2019

Crystal structure of AdoMet radical enzyme 7-carboxy-7-deazaguanine synthase from Escherichia coli suggests how modifications near [4Fe-4S] cluster engender flavodoxin specificity.

Tsehai A J Grell, Benjamin N Bell, Chi Nguyen, Daniel P Dowling, Nathan A Bruender, Vahe Bandarian, Catherine L Drennan

Abstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Biosynthesis and function of 7-deazaguanine derivatives in bacteria and phages.Microbiology and molecular biology reviews : MMBR · 2024
    Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Analysis of Electrochemical Properties ofJournal of the American Chemical Society · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Tsehai A J GrellDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts, 02139.
Benjamin N BellDepartment of Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts, 02139.
Chi NguyenDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts, 02139.
Daniel P DowlingHoward Hughes Medical Institute, Massachusetts Institute of Technology, Cambridge, Massachusetts, 02139.
Nathan A BruenderDepartment of Chemistry, University of Utah, Salt Lake City, Utah, 84112.
Vahe BandarianDepartment of Chemistry, University of Utah, Salt Lake City, Utah, 84112.
Catherine L DrennanDepartment of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts, 02139.ORCID 0000-0001-5486-2755

Funding

Overall EvaluationP41GM103403 · NIGMS · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2012 to 2017
$14.3M
This proposal is in response to PA-20-272. It is an administrative supplement to purchase a new peptide synthesizer to support R35 GM126956R35GM126956 · NIGMS · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI VAHE BANDARIAN · 2018 to 2026
$5.3M
Biosynthesis of Deazapurine-Containing MetabolitesR01GM072623 · NIGMS · UNIVERSITY OF UTAH · PI BANDARIAN, VAHE · 2005 to 2017
$3.9M
Metalloenzyme structure, function and assemblyR35GM126982 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI CATHERINE L DRENNAN · 2018 to 2026
$3.4M
Pixel Array Detector for X-ray CrystallographyS10RR029205 · NCRR · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2010 to 2010
$1.8M
Mechanistic studies of thioether crosslink formation in peptidesR01GM120638 · NIGMS · UNIVERSITY OF UTAH · PI BANDARIAN, VAHE · 2016 to 2017
$695k
Howard Hughes Medical InstituteNCRR NIH HHS S10 RR029205NIGMS NIH HHS P41 GM103403NIGMS NIH HHS R01 GM072623NIGMS NIH HHS R01 GM120638NIGMS NIH HHS R35 GM126956NIGMS NIH HHS R35 GM126982NIH HHS R01 GM72623NIH HHS R35 GM126956 and R35 GM126982NIH HHS R35 GM126982
6 · The paper itself

Abstract

7-Carboxy-7-deazaguanine synthase, QueE, catalyzes the radical mediated ring contraction of 6-carboxy-5,6,7,8-tetrahydropterin, forming the characteristic pyrrolopyrimidine core of all 7-deazaguanine natural products. QueE is a member of the S-adenosyl-L-methionine (AdoMet) radical enzyme superfamily, which harnesses the reactivity of radical intermediates to perform challenging chemical reactions. Members of the AdoMet radical enzyme superfamily utilize a canonical binding motif, a CX

Indexed as

Amino Acid MotifsCarbon-Nitrogen LyasesCrystallography, X-RayEscherichia coliEscherichia coli ProteinsFlavodoxinIron-Sulfur ProteinsProtein DomainsSubstrate SpecificityCarbon-Nitrogen LyasesEscherichia coli ProteinsFlavodoxinIron-Sulfur ProteinsAdoMet radical enzymesflavin mononucleotideflavodoxiniron-sulfur clustersphysiological reductant

Identifiers

PMID30341796
PMCPMC6295903

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.