Evidence map›Paper›PMID 30341661›Full record

ArticlePlant molecular biology2018

An integrated proteomic and metabolomic study to evaluate the effect of nucleus-cytoplasm interaction in a diploid citrus cybrid between sweet orange and lemon.

Teresa Faddetta, Loredana Abbate, Giovanni Renzone, Antonio Palumbo Piccionello, Antonella Maggio, Elisabetta Oddo, Andrea Scaloni, Anna Maria Puglia, Giuseppe Gallo, Francesco Carimi and 2 more

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Article in Plant molecular biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
2.0field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Teresa FaddettaDepartment of Biological, Chemical and Pharmaceutical Sciences and Technologies (STEBICEF), University of Palermo, Palermo, Italy.
Loredana AbbateInstitute of Biosciences and Bioresources (IBBR), National Research Council, Palermo, Italy.
Giovanni RenzoneProteomics & Mass Spectrometry Laboratory, ISPAAM, National Research Council, Naples, Italy.
Antonio Palumbo PiccionelloDepartment of Biological, Chemical and Pharmaceutical Sciences and Technologies (STEBICEF), University of Palermo, Palermo, Italy.
Antonella MaggioDepartment of Biological, Chemical and Pharmaceutical Sciences and Technologies (STEBICEF), University of Palermo, Palermo, Italy.
Elisabetta OddoDepartment of Biological, Chemical and Pharmaceutical Sciences and Technologies (STEBICEF), University of Palermo, Palermo, Italy.
Andrea ScaloniProteomics & Mass Spectrometry Laboratory, ISPAAM, National Research Council, Naples, Italy.
Anna Maria PugliaDepartment of Biological, Chemical and Pharmaceutical Sciences and Technologies (STEBICEF), University of Palermo, Palermo, Italy.
Giuseppe GalloDepartment of Biological, Chemical and Pharmaceutical Sciences and Technologies (STEBICEF), University of Palermo, Palermo, Italy.
Francesco CarimiInstitute of Biosciences and Bioresources (IBBR), National Research Council, Palermo, Italy.
Sergio Fatta Del BoscoInstitute of Biosciences and Bioresources (IBBR), National Research Council, Palermo, Italy.
Francesco MercatiInstitute of Biosciences and Bioresources (IBBR), National Research Council, Palermo, Italy. francesco.mercati@ibbr.cnr.it.ORCID http://orcid.org/0000-0003-1356-2881
University of Palermo · ITInstitute of Biosciences and Bioresources · ITIstituto per il Sistema Produzione Animale in Ambiente Mediterraneo · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

key messageOur results provide a comprehensive overview how the alloplasmic condition might lead to a significant improvement in citrus plant breeding, developing varieties more adaptable to a wide range of conditions. Citrus cybrids resulting from somatic hybridization hold great potential in plant improvement. They represent effective products resulting from the transfer of organelle-encoded traits into cultivated varieties. In these cases, the plant coordinated array of physiological, biochemical, and molecular functions remains the result of integration among different signals, which derive from the compartmentalized genomes of nucleus, plastids and mitochondria. To dissect the effects of genome rearrangement into cybrids, a multidisciplinary study was conducted on a diploid cybrid (C2N), resulting from a breeding program aimed to improve interesting agronomical traits for lemon, the parental cultivars 'Valencia' sweet orange (V) and 'femminello' lemon (F), and the corresponding somatic allotetraploid hybrid (V + F). In particular, a differential proteomic analysis, based on 2D-DIGE and MS procedures, was carried out on leaf proteomes of C2N, V, F and V + F, using the C2N proteome as pivotal condition. This investigation revealed differentially represented protein patterns that can be associated with genome rearrangement and cell compartment interplay. Interestingly, most of the up-regulated proteins in the cybrid are involved in crucial biological processes such as photosynthesis, energy production and stress tolerance response. The cybrid differential proteome pattern was concomitant with a general increase of leaf gas exchange and content of volatile organic compounds, highlighting a stimulation of specific pathways that can be related to observed plant performances. Our results contribute to a better understanding how the alloplasmic condition might lead to a substantial improvement in plant breeding, opening new opportunities to develop varieties more adaptable to a wide range of conditions.

Indexed as

DiploidyCell NucleusChromatography, High Pressure LiquidChromatography, Reverse-PhaseCitrusCitrus sinensisCytoplasmDisaccharidesElectrophoresis, Gel, Two-DimensionalGlucuronatesMass SpectrometryMetabolomicsPlant BreedingPlant LeavesPlant ProteinsProteomicsDisaccharidesGlucuronatesO-(glucuronic acid 2-sulfate)-(1--4)-O-(2,5)-anhydromannitol 6-sulfatePlant ProteinsVolatile Organic CompoundsCitrus spp.CybridProteomicsProtoplast fusionStomatal conductanceVolatile organic compounds

Identifiers

PMID30341661
OpenAlexW2897871379

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.