Evidence map›Paper›PMID 30341491›Full record

ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2019

Construction of a high-density linkage map and QTL detection of downy mildew resistance in Vitis aestivalis-derived 'Norton'.

Surya Sapkota, Li-Ling Chen, Shanshan Yang, Katie E Hyma, Lance Cadle-Davidson, Chin-Feng Hwang

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In one paragraph

Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
10.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 63 citations in OpenAlex.

  1. A novel resistance locus from an unexploited East Asian Vitis coignetiae confers resistance to grapevine downy mildew.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026
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  5. Genome-Wide Association Study of Grape Texture Based on Puncture.International journal of molecular sciences · 2024
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  10. Basic leucine zipper geneHorticulture research · 2023
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  12. Candidate gene discovery ofFrontiers in plant science · 2023
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  13. Frontiers in microbiology · 2022
    Review
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  17. Review
  18. The Study of the Germination Dynamics ofFrontiers in microbiology · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Surya SapkotaState Fruit Experiment Station at Mountain Grove Campus, Darr College of Agriculture, Missouri State University, Springfield, MO, 65897, USA.
Li-Ling ChenState Fruit Experiment Station at Mountain Grove Campus, Darr College of Agriculture, Missouri State University, Springfield, MO, 65897, USA.
Shanshan YangBioinformatics Core Facility, The Biodesign Institute, Arizona State University, Tempe, AZ, 85287-5001, USA.
Katie E HymaBioinformatics Facility, Institute of Biotechnology, Cornell University, Ithaca, NY, 14853, USA.
Lance Cadle-DavidsonUSDA-ARS Grape Genetics Research Unit, Geneva, NY, 14456, USA.
Chin-Feng HwangState Fruit Experiment Station at Mountain Grove Campus, Darr College of Agriculture, Missouri State University, Springfield, MO, 65897, USA. ChinFengHwang@MissouriState.edu.
Missouri State University · USArizona State University · USCornell University · USUniversity of Missouri · US

Funding

U.S. Department of Agriculture AgricultureU.S. Department of Agriculture Food Research Initiative (2013-67014-21360)
6 · The paper itself

Abstract

key messageA major QTL for downy mildew resistance was detected on chromosome 18 (Rpv27) in Vitis aestivalis-derived 'Norton' based on a high-resolution linkage map with SNP and SSR markers as well as 2 years of field and laboratory phenotyping data. Grapevine downy mildew caused by the oomycete Plasmopara viticola is one of the most widespread and destructive diseases, particularly in humid viticultural areas where it damages green tissues and defoliates vines. Traditional Vitis vinifera wine grape cultivars are susceptible to downy mildew whereas several North American and a few Asian cultivars possess various levels of resistance to this disease. To identify genetic determinants of downy mildew resistance in V. aestivalis-derived 'Norton,' a mapping population with 182 genotypes was developed from a cross between 'Norton' and V. vinifera 'Cabernet Sauvignon' from which a consensus map was constructed via 411 simple sequence repeat (SSR) markers. Using genotyping-by-sequencing, 3825 single nucleotide polymorphism (SNP) markers were also generated. Of these, 1665 SNP and 407 SSR markers were clustered into 19 linkage groups in 159 genotypes, spanning a genetic distance of 2203.5 cM. Disease progression in response to P. viticola was studied in this population for 2 years under both laboratory and field conditions, and strong correlations were observed among data sets (Spearman correlation coefficient = 0.57-0.79). A quantitative trait loci (QTL) analysis indicated a resistance locus on chromosome 18, here named Rpv27, explaining 33.8% of the total phenotypic variation. Flanking markers closely linked with the trait can be further used for marker-assisted selection in the development of new cultivars with resistance to downy mildew.

Indexed as

Chromosome MappingGenetic LinkageChromosomes, PlantDisease ResistanceGenotypeMicrosatellite RepeatsOomycetesPhenotypePlant DiseasesPolymorphism, Single NucleotideQuantitative Trait LociVitis

Identifiers

PMID30341491
OpenAlexW2896991890

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.