Evidence map›Paper›PMID 30341342›Full record

ArticleScientific reports2018

Comparative venom-gland transcriptomics and venom proteomics of four Sidewinder Rattlesnake (Crotalus cerastes) lineages reveal little differential expression despite individual variation.

Erich P Hofmann, Rhett M Rautsaw, Jason L Strickland, Matthew L Holding, Michael P Hogan, Andrew J Mason, Darin R Rokyta, Christopher L Parkinson

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed, 1 pooled it
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 1 synthesis or guideline pooled it, 54 citations in OpenAlex.

  1. Pooled it
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  4. Review
  5. Review
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  9. Article
  10. Anticancer potency of Egyptian venom snakes on MCF-7 and HepG2 carcinoma cells.Environmental analysis, health and toxicology · 2024
    Article
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  12. Review
  13. Toxins · 2023
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  14. Article
  15. Article
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  17. Venom phenotype conservation suggests integrated specialization in a lizard-eating snake.Toxicon : official journal of the International Society on Toxinology · 2023
    Article
  18. Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Erich P HofmannClemson University, Department of Biological Sciences, Clemson, SC, 29634, USA.ORCID http://orcid.org/0000-0001-6209-6800
Rhett M RautsawClemson University, Department of Biological Sciences, Clemson, SC, 29634, USA.ORCID http://orcid.org/0000-0002-8229-5951
Jason L StricklandClemson University, Department of Biological Sciences, Clemson, SC, 29634, USA.ORCID http://orcid.org/0000-0002-1927-7259
Matthew L HoldingClemson University, Department of Biological Sciences, Clemson, SC, 29634, USA.ORCID http://orcid.org/0000-0003-3477-3012
Michael P HoganFlorida State University, Department of Biological Science, Tallahassee, FL, 32306, USA.
Andrew J MasonClemson University, Department of Biological Sciences, Clemson, SC, 29634, USA.
Darin R RokytaFlorida State University, Department of Biological Science, Tallahassee, FL, 32306, USA.
Christopher L ParkinsonClemson University, Department of Biological Sciences, Clemson, SC, 29634, USA. viper@clemson.edu.ORCID http://orcid.org/0000-0002-2020-6992
Clemson University · USFlorida State University · USUniversity of Central Florida · US

Funding

National Science Foundation (NSF) 1145987National Science Foundation (NSF) 1161228National Science Foundation (NSF) 1638879National Science Foundation (NSF) 1638902National Science Foundation (NSF) 1822417
6 · The paper itself

Abstract

Changes in gene expression can rapidly influence adaptive traits in the early stages of lineage diversification. Venom is an adaptive trait comprised of numerous toxins used for prey capture and defense. Snake venoms can vary widely between conspecific populations, but the influence of lineage diversification on such compositional differences are unknown. To explore venom differentiation in the early stages of lineage diversification, we used RNA-seq and mass spectrometry to characterize Sidewinder Rattlesnake (Crotalus cerastes) venom. We generated the first venom-gland transcriptomes and complementary venom proteomes for eight individuals collected across the United States and tested for expression differences across life history traits and between subspecific, mitochondrial, and phylotranscriptomic hypotheses. Sidewinder venom was comprised primarily of hemorrhagic toxins, with few cases of differential expression attributable to life history or lineage hypotheses. However, phylotranscriptomic lineage comparisons more than doubled instances of significant expression differences compared to all other factors. Nevertheless, only 6.4% of toxins were differentially expressed overall, suggesting that shallow divergence has not led to major changes in Sidewinder venom composition. Our results demonstrate the need for consensus venom-gland transcriptomes based on multiple individuals and highlight the potential for discrepancies in differential expression between different phylogenetic hypotheses.

Indexed as

Exocrine GlandsTranscriptomeAnimalsCrotalusGene Expression ProfilingMass SpectrometryPoisonsProteomeProteomicsSequence Analysis, RNAUnited StatesVenomsPoisonsProteomeVenoms

Identifiers

PMID30341342
PMCPMC6195556
OpenAlexW2897443611

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.