Evidence map›Paper›PMID 30341336›Full record

ArticleScientific reports2018

Deep sequencing of primary human lung epithelial cells challenged with H5N1 influenza virus reveals a proviral role for CEACAM1.

Siying Ye, Christopher J Cowled, Cheng-Hon Yap, John Stambas

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.1field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Enhanced expression of immune checkpoint receptors during SARS-CoV-2 viral infection.Molecular therapy. Methods & clinical development · 2021
    Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Pathogenic interactions betweenIranian journal of basic medical sciences · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Siying YeSchool of Medicine, Deakin University, Waurn Ponds, Victoria, Australia. siying.ye@csiro.au.
Christopher J CowledHealth & Biosecurity, CSIRO, East Geelong, Victoria, Australia.ORCID http://orcid.org/0000-0002-1969-9371
Cheng-Hon YapUniversity Hospital Geelong, Barwon Health, Geelong, Victoria, Australia.
John StambasSchool of Medicine, Deakin University, Waurn Ponds, Victoria, Australia.
Commonwealth Scientific and Industrial Research Organisation · AUBarwon Health · AUCSIRO Health and Biosecurity · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Current prophylactic and therapeutic strategies targeting human influenza viruses include vaccines and antivirals. Given variable rates of vaccine efficacy and antiviral resistance, alternative strategies are urgently required to improve disease outcomes. Here we describe the use of HiSeq deep sequencing to analyze host gene expression in primary human alveolar epithelial type II cells infected with highly pathogenic avian influenza H5N1 virus. At 24 hours post-infection, 623 host genes were significantly upregulated, including the cell adhesion molecule CEACAM1. H5N1 virus infection stimulated significantly higher CEACAM1 protein expression when compared to influenza A PR8 (H1N1) virus, suggesting a key role for CEACAM1 in influenza virus pathogenicity. Furthermore, silencing of endogenous CEACAM1 resulted in reduced levels of proinflammatory cytokine/chemokine production, as well as reduced levels of virus replication following H5N1 infection. Our study provides evidence for the involvement of CEACAM1 in a clinically relevant model of H5N1 infection and may assist in the development of host-oriented antiviral strategies.

Indexed as

Host-Pathogen InteractionsAlveolar Epithelial CellsAntigens, CDCell Adhesion MoleculesCells, CulturedGene Expression ProfilingHigh-Throughput Nucleotide SequencingHumansInfluenza A Virus, H1N1 SubtypeInfluenza A Virus, H5N1 SubtypeAntigens, CDCD66 antigensCell Adhesion Molecules

Identifiers

PMID30341336
PMCPMC6195505
OpenAlexW2951875377

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.