Evidence map›Paper›PMID 30341334›Full record

ArticleScientific reports2018

Monomerization of the photoconvertible fluorescent protein SAASoti by rational mutagenesis of single amino acids.

Ilya D Solovyev, Alexandra V Gavshina, Aditya S Katti, Alexey I Chizhik, Leonid M Vinokurov, Grigory D Lapshin, Tatiana V Ivashina, Maria G Khrenova, Igor I Kireev, Ingo Gregor and 2 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.8field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 3 countries.

Ilya D SolovyevA.N. Bach Institute of Biochemistry, Research Center of Biotechnology of the Russian Academy of Sciences, Moscow, Russia.
Alexandra V GavshinaA.N. Bach Institute of Biochemistry, Research Center of Biotechnology of the Russian Academy of Sciences, Moscow, Russia.
Aditya S KattiUniversity of Göttingen, Third Institute of Physics - Biophysics, Friedrich-Hund-Platz 1, 37077, Göttingen, Germany.
Alexey I ChizhikUniversity of Göttingen, Third Institute of Physics - Biophysics, Friedrich-Hund-Platz 1, 37077, Göttingen, Germany.
Leonid M VinokurovBranch of Shemyakin and Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Pushchino, Moscow Region, Russia.
Grigory D LapshinA.N. Bach Institute of Biochemistry, Research Center of Biotechnology of the Russian Academy of Sciences, Moscow, Russia.
Tatiana V IvashinaSkryabin Institute of Biochemistry and Physiology of Microorganisms, Russian Academy of Sciences, Pushchino, Moscow Region, Russia.
Maria G KhrenovaA.N. Bach Institute of Biochemistry, Research Center of Biotechnology of the Russian Academy of Sciences, Moscow, Russia.
Igor I KireevA.N. Belozersky Institute of Physico-Chemical Biology, M.V. Lomonosov Moscow State University, Moscow, Russia.ORCID http://orcid.org/0000-0001-9252-6808
Ingo GregorUniversity of Göttingen, Third Institute of Physics - Biophysics, Friedrich-Hund-Platz 1, 37077, Göttingen, Germany.
Jörg EnderleinUniversity of Göttingen, Third Institute of Physics - Biophysics, Friedrich-Hund-Platz 1, 37077, Göttingen, Germany.
Alexander P SavitskyA.N. Bach Institute of Biochemistry, Research Center of Biotechnology of the Russian Academy of Sciences, Moscow, Russia. apsavitsky@inbi.ras.ru.ORCID http://orcid.org/0000-0002-6820-2341
Lomonosov Moscow State University · RUUniversity of Göttingen · DEA N Bach Institute of Biochemistry · RUG. K. Skryabin Institute of Biochemistry and Physiology of Microorganisms · RUInstitute of Bioorganic Chemistry · RU

Funding

Deutsche Forschungsgemeinschaft (German Research Foundation) DFG, SFB 937, project A14Deutsche Forschungsgemeinschaft (German Research Foundation) SFB 860, project A06Russian Science Foundation (RSF) 15-14-30019
6 · The paper itself

Abstract

Photoconvertible fluorescent proteins (PCFPs) are widely used as markers for the visualization of intracellular processes and for sub-diffraction single-molecule localization microscopy. Although wild type of a new photoconvertible fluorescent protein SAASoti tends to aggregate, we succeeded, via rational mutagenesis, to obtain variants that formed either tetramers or monomers. We compare two approaches: one is based on the structural similarity between SAASoti and Kaede, which helped us to identify a single point mutation (V127T) at the protein's hydrophobic interface that leads to monomerization. The other is based on a chemical modification of amino groups of SAASoti with succinic anhydride, which converts the protein aggregates into monomers. Mass-spectrometric analysis helped us to identify that the modification of a single ε-amino group of lysine K145 in the strongly charged interface AB was sufficient to convert the protein into its tetrameric form. Furthermore, site-directed mutagenesis was used to generate mutants that proved to be either monomeric or tetrameric, both capable of rapid green-to-red photoconversion. This allows SAASoti to be used as a photoconvertible fluorescent marker for in vivo cell studies.

Indexed as

Mutagenesis, Site-DirectedProtein MultimerizationAmino AcidsLuminescent ProteinsMass SpectrometryRecombinant ProteinsAmino AcidsLuminescent ProteinsRecombinant Proteins

Identifiers

PMID30341334
PMCPMC6195611
OpenAlexW2897749385

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.