Evidence map›Paper›PMID 30341330›Full record

ArticleScientific reports2018

Porcine circovirus 2 (PCV-2) genetic variability under natural infection scenario reveals a complex network of viral quasispecies.

Florencia Correa-Fiz, Giovanni Franzo, Anna Llorens, Joaquim Segalés, Tuija Kekarainen

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 45 citations in OpenAlex.

  1. Review
  2. Article
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  5. When Everything Becomes Bigger: Big Data for Big Poultry Production.Animals : an open access journal from MDPI · 2023
    Review
  6. Detection and Genomic Characterization of Bovine Rhinitis Virus in China.Animals : an open access journal from MDPI · 2023
    Article
  7. Porcine circovirus 3: a new challenge to explore.Frontiers in veterinary science · 2023
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Detection and Genomic Characterization of Canine Circovirus in Iran.Animals : an open access journal from MDPI · 2022
    Article
  13. Article
  14. Article
  15. Article
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Florencia Correa-FizCentre de Recerca en Sanitat Animal (CReSA, IRTA-UAB), IRTA, Bellaterra, Spain. flor.correa@irta.cat.
Giovanni FranzoDepartment of Animal Medicine, Production and Health (MAPS), University of Padua, Legnaro, PD, Italy.
Anna LlorensCentre de Recerca en Sanitat Animal (CReSA, IRTA-UAB), IRTA, Bellaterra, Spain.
Joaquim SegalésCentre de Recerca en Sanitat Animal (CReSA, IRTA-UAB), IRTA, Bellaterra, Spain.
Tuija KekarainenCentre de Recerca en Sanitat Animal (CReSA, IRTA-UAB), IRTA, Bellaterra, Spain.
Centre de Recerca en Sanitat Animal · ESUniversity of Padua · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Porcine circovirus 2 (PCV-2) is a virus characterized by a high evolutionary rate, promoting the potential emergence of different genotypes and strains. Despite the likely relevance in the emergence of new PCV-2 variants, the subtle evolutionary patterns of PCV-2 at the individual-host level or over short transmission chains are still largely unknown. This study aimed to analyze the within-host genetic variability of PCV-2 subpopulations to unravel the forces driving PCV-2 evolution. A longitudinal weekly sampling was conducted on individual animals located in three farms after the first PCV-2 detection. The analysis of polymorphisms evaluated throughout the full PCV-2 genome demonstrated the presence of several single nucleotide polymorphisms (SNPs) especially in the genome region encoding for the capsid gene. The global haplotype reconstruction allowed inferring the virus transmission network over time, suggesting a relevant within-farm circulation. Evidences of co-infection and recombination involving multiple PCV-2 genotypes were found after mixing with pigs originating from other sources. The present study demonstrates the remarkable within-host genetic variability of PCV-2 quasispecies, suggesting the role of the natural selection induced by the host immune response in driving PCV-2 evolution. Moreover, the effect of pig management in multiple genotype coinfections occurrence and recombination likelihood was demonstrated.

Indexed as

GenotypeAnimalsBiological EvolutionCapsid ProteinsCircoviridae InfectionsCircovirusCoinfectionComputer SimulationDNA, ViralPolymorphism, Single NucleotideQuasispeciesSelection, GeneticSwineSwine DiseasesVirulenceCapsid ProteinsDNA, Viral

Identifiers

PMID30341330
PMCPMC6195574
OpenAlexW2896529920

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.