Evidence map›Paper›PMID 30341289›Full record

ArticleNature communications2018

Incompatibility of the circadian protein BMAL1 and HNF4α in hepatocellular carcinoma.

Baharan Fekry, Aleix Ribas-Latre, Corrine Baumgartner, Jonathan R Deans, Christopher Kwok, Pooja Patel, Loning Fu, Rebecca Berdeaux, Kai Sun, Mikhail G Kolonin and 4 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 81 papers.

0numbers the graph read from it
0cells of the map it votes in
81citing papers in PubMed
5.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

81 citing papers in PubMed, 107 citations in OpenAlex.

  1. Review
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  6. Article
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  8. Article
  9. Circadian clock and cancer.Military Medical Research · 2026
    Review
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  15. Observational
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21 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 1 country.

Baharan FekryInstitute of Molecular Medicine, McGovern Medical School at the University of Texas Health Science Center (UT Health), Houston, TX, 77030, USA.
Aleix Ribas-LatreInstitute of Molecular Medicine, McGovern Medical School at the University of Texas Health Science Center (UT Health), Houston, TX, 77030, USA.
Corrine BaumgartnerInstitute of Molecular Medicine, McGovern Medical School at the University of Texas Health Science Center (UT Health), Houston, TX, 77030, USA.
Jonathan R DeansDepartment of Molecular, Cell and Systems Biology, University of California Riverside, Riverside, CA, 92521, USA.
Christopher KwokInstitute of Molecular Medicine, McGovern Medical School at the University of Texas Health Science Center (UT Health), Houston, TX, 77030, USA.
Pooja PatelDepartment of Pediatrics, Molecular and Cellular Biology, Children's Nutrition Research Center, Baylor College of Medicine, Houston, TX, 77030, USA.
Loning FuDepartment of Pediatrics, Molecular and Cellular Biology, Children's Nutrition Research Center, Baylor College of Medicine, Houston, TX, 77030, USA.
Rebecca BerdeauxInstitute of Molecular Medicine, McGovern Medical School at the University of Texas Health Science Center (UT Health), Houston, TX, 77030, USA.
Kai SunInstitute of Molecular Medicine, McGovern Medical School at the University of Texas Health Science Center (UT Health), Houston, TX, 77030, USA.
Mikhail G KoloninInstitute of Molecular Medicine, McGovern Medical School at the University of Texas Health Science Center (UT Health), Houston, TX, 77030, USA.ORCID http://orcid.org/0000-0002-3743-7869
Sidney H WangInstitute of Molecular Medicine, McGovern Medical School at the University of Texas Health Science Center (UT Health), Houston, TX, 77030, USA.
Seung-Hee YooDepartment of Biochemistry and Molecular Biology, McGovern Medical School at the University of Texas Health Science Center (UT Health), Houston, TX, 77030, USA.
Frances M SladekDepartment of Molecular, Cell and Systems Biology, University of California Riverside, Riverside, CA, 92521, USA.
Kristin Eckel-MahanInstitute of Molecular Medicine, McGovern Medical School at the University of Texas Health Science Center (UT Health), Houston, TX, 77030, USA. Kristin.L.Mahan@uth.tmc.edu.ORCID http://orcid.org/0000-0001-8201-1675
The University of Texas Health Science Center at Houston · USChildren's Nutrition Research Center at Baylor College of Medicine · USThe University of Texas Health Science Center · USUniversity of California, Riverside · US

Funding

Tissue Analysis & Molecular Imaging CoreP30DK056338 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI Geoffrey A Preidis · 2001 to 2026
$28.3M
Regulation of glucose utilization by skeletal muscle SIK1R01DK092590 · NIDDK · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI BERDEAUX, REBECCA L · 2011 to 2021
$3.3M
(PQ6)Nuclear receptor mechanisms in circadian disruption induced hepatocarcinogenesisR01CA230848 · NCI · BAYLOR COLLEGE OF MEDICINE · PI FU, LONING NONE, MOORE, DAVID D · 2018 to 2022
$2.3M
Dichotomous Effects of MT1-MMP on Adipose Tissue RemodelingR01DK109001 · NIDDK · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI SUN, KAI · 2017 to 2021
$2.0M
Origins of Diet-Induced Circadian Reprogramming and PlasticityR01DK114037 · NIDDK · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI MAHAN, KRISTIN ECKEL · 2018 to 2022
$1.9M
Regulation and function of the circadian factor Period2R01GM114424 · NIGMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI YOO, SEUNG-HEE · 2015 to 2019
$1.6M
American Cancer Society (American Cancer Society, Inc.) RSG-17-215-01-CNCI NIH HHS R01 CA230848NIDDK NIH HHS P30 DK056338NIDDK NIH HHS R01 DK092590NIDDK NIH HHS R01 DK109001NIDDK NIH HHS R01 DK114037NIGMS NIH HHS R01 GM114424U.S. Department of Health & Human Services | National Institutes of Health (NIH) DK053895U.S. Department of Health & Human Services | National Institutes of Health (NIH) DK092590U.S. Department of Health & Human Services | National Institutes of Health (NIH) DK09470U.S. Department of Health & Human Services | National Institutes of Health (NIH) DK109001U.S. Department of Health & Human Services | National Institutes of Health (NIH) DK114037
6 · The paper itself

Abstract

Hepatocyte nuclear factor 4 alpha (HNF4α) is a master regulator of liver-specific gene expression with potent tumor suppressor activity, yet many liver tumors express HNF4α. This study reveals that P1-HNF4α, the predominant isoform expressed in the adult liver, inhibits expression of tumor promoting genes in a circadian manner. In contrast, an additional isoform of HNF4α, driven by an alternative promoter (P2-HNF4α), is induced in HNF4α-positive human hepatocellular carcinoma (HCC). P2-HNF4α represses the circadian clock gene ARNTL (BMAL1), which is robustly expressed in healthy hepatocytes, and causes nuclear to cytoplasmic re-localization of P1-HNF4α. We reveal mechanisms underlying the incompatibility of BMAL1 and P2-HNF4α in HCC, and demonstrate that forced expression of BMAL1 in HNF4α-positive HCC prevents the growth of tumors in vivo. These data suggest that manipulation of the circadian clock in HNF4α-positive HCC could be a tractable strategy to inhibit tumor growth and progression in the liver.

Indexed as

Active Transport, Cell NucleusARNTL Transcription FactorsCarcinoma, HepatocellularCircadian ClocksGene Expression Regulation, NeoplasticGene Knockdown TechniquesHepatocyte Nuclear Factor 4HepatocytesLiver NeoplasmsProtein IsoformsARNTL Transcription FactorsBMAL1 protein, humanHepatocyte Nuclear Factor 4HNF4A protein, humanProtein Isoforms

Identifiers

PMID30341289
PMCPMC6195513
OpenAlexW2897301109

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.