Evidence map›Paper›PMID 30340611›Full record

ArticleVirology journal2018

Glycan binding patterns of human rotavirus P[10] VP8* protein.

Li-Li Pang, Meng-Xuan Wang, Xiao-Man Sun, Yue Yuan, Yu Qing, Yan Xin, Jia-Yan Zhang, Dan-di Li, Zhao-Jun Duan

Open access · goldAbstract read
In one paragraph

Article in Virology journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. Structural Basis of Glycan Recognition of Rotavirus.Frontiers in molecular biosciences · 2021
    Review
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Li-Li PangNational Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, 102206, China.
Meng-Xuan WangNational Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, 102206, China.
Xiao-Man SunNational Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, 102206, China.
Yue YuanBasic Medical College, Inner Mongolia Medical University, Hohhot, 010000, China.
Yu QingNational Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, 102206, China.
Yan XinBasic Medical College, Inner Mongolia Medical University, Hohhot, 010000, China.
Jia-Yan ZhangDepartment of Food and Chemical Engineering, Lushan College of Guangxi University of Science and Technology, Liuzhou, 545616, Guangxi, China.
Dan-di LiNational Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, 102206, China. dandili@126.com.
Zhao-Jun DuanNational Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, 102206, China. zhaojund@126.com.
Guangxi University of Science and Technology · CNNational Institute for Viral Disease Control and Prevention · CNInner Mongolia Medical University · CNNational Health and Family Planning Commission · CN

Funding

National Natural Science Foundation of China 31500139National Natural Science Foundation of China 81472003National Natural Science Foundation of China 81601813the special national project on research and development of key biosafety technologies 2016YFC1201900
6 · The paper itself

Abstract

backgroundRotaviruses (RVs) are a major cause of acute children gastroenteritis. The rotavirus P [10] belongs to P[I] genogroup of group A rotaviruses that mainly infect animals, while the rotavirus P [10] was mainly identified from human infection. The rotavirus P [10] is an unusual genotype and the recognition pattern of cellular receptors remains unclear.

methodsWe expressed and purified the RV P [10] VP8* protein and investigated the saliva and oligosaccharide binding profiles of the protein. A homology model of the P [10] VP8* core protein was built and the superimposition structural analysis of P [10] VP8* protein on P [19] VP8* in complex with mucin core 2 was performed to explore the possible docking structural basis of P [10] VP8* and mucin cores.

resultsOur data showed that rotavirus P [10] VP8* protein bound to all ABO secretor and non-secretor saliva. The rotavirus P [10] could bind strongly to mucin core 2 and weakly to mucin core 4. The homology modeling indicated that RV P [10] VP8* binds to mucin core 2 using a potential glycan binding site that is the same to P [19] VP8* belonging to P[II] genogroup.

conclusionOur results suggested an interaction of rotavirus P [10] VP8* protein with mucin core 2 and mucin core 4. These findings offer potential for elucidating the mechanism of RV A host specificity, evolution and epidemiology.

Indexed as

Binding SitesEscherichia coliGastroenteritisHumansMolecular Docking SimulationMucinsPolysaccharidesProtein BindingRNA-Binding ProteinsRotavirusRotavirus InfectionsSalivaSequence Analysis, ProteinViral Nonstructural ProteinsMucinsNS35 protein, rotavirusPolysaccharidesRNA-Binding ProteinsViral Nonstructural ProteinsMucin coreOligosaccharide binding assayP [10] genotypeRotavirusVP8*

Identifiers

PMID30340611
PMCPMC6195756
OpenAlexW2895955177

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.