Evidence map›Paper›PMID 30340471›Full record

ArticleBMC medical genetics2018

Detection of a heterozygous germline APC mutation in a three-generation family with familial adenomatous polyposis using targeted massive parallel sequencing in Vietnam.

Hoa Giang, Vu T Nguyen, Sinh D Nguyen, Huu-Phuc Nguyen, Binh T Vo, Truc M Nguyen, Nguyen H Nguyen, Kiet D Truong, Thanh-Thuy T Do, Minh-Duy Phan and 1 more

Open access · goldAbstract read
In one paragraph

Article in BMC medical genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.5field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
  3. Update on Surgical Management of FAP.Clinics in colon and rectal surgery · 2023
    Review
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 7 institutions in 2 countries.

Hoa GiangGene Solutions, Ho Chi Minh city, Vietnam. gianghoa@gmail.com.
Vu T NguyenThu Duc Hospital, Ho Chi Minh city, Vietnam.
Sinh D NguyenVinmec Central Park International Hospital, Ho Chi Minh city, Vietnam.
Huu-Phuc NguyenDepartment of Oncology, University of Medicine and Pharmacy, Ho Chi Minh city, Vietnam.
Binh T VoCenter for Molecular Medicine, University of Medicine and Pharmacy, Ho Chi Minh city, Vietnam.
Truc M NguyenCenter for Molecular Medicine, University of Medicine and Pharmacy, Ho Chi Minh city, Vietnam.
Nguyen H NguyenGene Solutions, Ho Chi Minh city, Vietnam.
Kiet D TruongMedical Genetics Institute, Ho Chi Minh city, Vietnam.
Thanh-Thuy T DoCenter for Molecular Medicine, University of Medicine and Pharmacy, Ho Chi Minh city, Vietnam.
Minh-Duy PhanGene Solutions, Ho Chi Minh city, Vietnam. pmduy@yahoo.com.
Hoai-Nghia NguyenCenter for Molecular Medicine, University of Medicine and Pharmacy, Ho Chi Minh city, Vietnam. nhnghia81@gmail.com.ORCID 0000-0002-1542-1874
University of Medicine and Pharmacy at Ho Chi Minh City · VNHo Chi Minh City University of Science · VNAgricultural Genetics Institute · VNHCMC Hospital of Dermato Venereology · VNUniversity Medical Center HCMC · VNVinmec International Hospital · VNYahoo (United Kingdom) · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundFamilial adenomatous polyposis (FAP) is an autosomal dominant hereditary syndrome characterised by the development of hundreds to thousands of adenomatous colonic polyps during the second decade of life. FAP is caused by germ line mutations in the adenomatous polyposis coli (APC) gene located on chromosome 5q21-22. CASE PRESENTATION: A 36-year-old female was presented with 100-1000 adenomatous colonic polyps, typical of classic FAP symptoms. Genetic testing using massively parallel sequencing identified a 5-bp deletion (c.3927_3931delAAAGA) which causes frameshift (p.Glu1309Aspfs) and creates a premature stop codon, resulting in the replacement of the last 1535 amino acids of APC by five incorrect amino acids. Two of the proband's four siblings also exhibited classic FAP symptoms and carried the same 5-bp heterozygous deletion in the APC gene. One of the proband's two nephews also tested positive for this mutation but has not been examined by endoscopy due to his young age.

conclusionsWe reported here for the first time the use of massively parallel sequencing (MPS)-based genetic testing to identify a germline mutation within a three-generation Vietnamese family. This mutation is most likely responsible for the development of FAP.

Indexed as

Frameshift MutationHeterozygoteAdenomatous Polyposis ColiAdenomatous Polyposis Coli ProteinAdultAsian PeopleChild, PreschoolChromosomes, Human, Pair 5ColectomyFemaleGene ExpressionGenetic TestingHigh-Throughput Nucleotide SequencingHumansMaleMiddle AgedAdenomatous Polyposis Coli ProteinAPC protein, humanAPC geneFamilial adenomatous polyposisGenetic testingGermline mutationMassively parallel sequencing

Identifiers

PMID30340471
PMCPMC6194589
OpenAlexW2896287794

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.