Evidence map›Paper›PMID 30339758›Full record

ArticleACS chemical biology2018

Hybrid Transcription Factor Engineering Activates the Silent Secondary Metabolite Gene Cluster for (+)-Asperlin in Aspergillus nidulans.

Michelle F Grau, Ruth Entwistle, Yi-Ming Chiang, Manmeet Ahuja, C Elizabeth Oakley, Tomohiro Akashi, Clay C C Wang, Richard B Todd, Berl R Oakley

Abstract read
In one paragraph

Article in ACS chemical biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 51 citations in OpenAlex.

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  4. Composite Recycling with Biocatalytic Thermoset Reforming.Journal of the American Chemical Society · 2024
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  5. Transcription Factor Engineering inJournal of natural products · 2024
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  6. Article
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  9. Molecular regulation of fungal secondary metabolism.World journal of microbiology & biotechnology · 2023
    Review
  10. Article
  11. Polyketides as Secondary Metabolites from the GenusJournal of fungi (Basel, Switzerland) · 2023
    Review
  12. Review
  13. Genomic Analysis of theMycobiology · 2023
    Article
  14. Article
  15. Review
  16. Article
  17. In silico analyses of maleidride biosynthetic gene clusters.Fungal biology and biotechnology · 2022
    Article
  18. Transcriptional Activation of Biosynthetic Gene Clusters in Filamentous Fungi.Frontiers in bioengineering and biotechnology · 2022
    Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 3 countries.

Michelle F GrauDepartment of Pharmacology and Pharmaceutical Sciences , School of Pharmacy, University of Southern California , Los Angeles , California 90089 , United States.
Ruth EntwistleDepartment of Molecular Biosciences , University of Kansas , Lawrence , Kansas 66045 , United States.
Yi-Ming ChiangDepartment of Pharmacology and Pharmaceutical Sciences , School of Pharmacy, University of Southern California , Los Angeles , California 90089 , United States.
Manmeet AhujaDepartment of Molecular Biosciences , University of Kansas , Lawrence , Kansas 66045 , United States.
C Elizabeth OakleyDepartment of Molecular Biosciences , University of Kansas , Lawrence , Kansas 66045 , United States.
Tomohiro AkashiDivision of OMICS Analysis, Center for Neurological Diseases and Cancer , Nagoya University Graduate School of Medicine , Nagoya 466-8550 , Japan.
Clay C C WangDepartment of Pharmacology and Pharmaceutical Sciences , School of Pharmacy, University of Southern California , Los Angeles , California 90089 , United States.ORCID 0000-0003-2955-7569
Richard B ToddDepartment of Plant Pathology , Kansas State University , 4024 Throckmorton Plant Sciences Center , Manhattan , Kansas 66506 , United States.
Berl R OakleyDepartment of Molecular Biosciences , University of Kansas , Lawrence , Kansas 66045 , United States.ORCID 0000-0002-3046-8240
University of Kansas · USUniversity of Southern California · USKansas State University · USNagoya University · JP

Funding

Molecular Genetic Mining of the Aspergillus Nidulans Secondary MetabolomeP01GM084077 · NIGMS · UNIVERSITY OF KANSAS LAWRENCE · PI OAKLEY, BERL RAY · 2008 to 2012
$5.4M
NIGMS NIH HHS P01 GM084077
6 · The paper itself

Abstract

Fungi are a major source of valuable bioactive secondary metabolites (SMs). These compounds are synthesized by enzymes encoded by genes that are clustered in the genome. The vast majority of SM biosynthetic gene clusters are not expressed under normal growth conditions, and their products are unknown. Developing methods for activation of these silent gene clusters offers the potential for discovering many valuable new fungal SMs. While a number of useful approaches have been developed, they each have limitations, and additional tools are needed. One approach, upregulation of SM gene cluster-specific transcription factors that are associated with many SM gene clusters, has worked extremely well in some cases, but it has failed more often than it has succeeded. Taking advantage of transcription factor domain modularity, we developed a new approach. We fused the DNA-binding domain of a transcription factor associated with a silent SM gene cluster with the activation domain of a robust SM transcription factor, AfoA. Expression of this hybrid transcription factor activated transcription of the genes in the target cluster and production of the antibiotic (+)-asperlin. Deletion of cluster genes confirmed that the cluster is responsible for (+)-asperlin production, and we designate it the aln cluster. Separately, coinduction of expression of two aln cluster genes revealed the pathway intermediate (2 Z,4 Z,6 E)-octa-2,4,6-trienoic acid, a compound with photoprotectant properties. Our findings demonstrate the potential of our novel synthetic hybrid transcription factor strategy to discover the products of other silent fungal SM gene clusters.

Indexed as

Multigene FamilyTranscriptional ActivationAspergillus nidulansEpoxy CompoundsFungal ProteinsGenes, FungalProtein DomainsProtein EngineeringPyronesRecombinant Fusion ProteinsTranscription FactorsasperlinEpoxy CompoundsFungal ProteinsPyronesRecombinant Fusion ProteinsTranscription Factors

Identifiers

PMID30339758
PMCPMC6546424
OpenAlexW2896324390

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.